RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MYH8P13535 1937 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 FAM196BA6NMK8 535 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 CTAGE5O15320 804 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 CYTH3O43739 400 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 IGSF3O75054 1194 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 CRKP46108 304 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 CERS3Q8IU89 383 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 JMYQ8N9B5 988 aa16.7■□□□□ 0.26
CLIP1-216ENST00000541410 PODNQ7Z5L7 613 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 SPC24Q8NBT2 197 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 RASGRP4Q8TDF6 673 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 ZNF287Q9HBT7 754 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 AKR1B1P15121 316 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 GRM4Q14833 912 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 ZNF174Q15697 407 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 PFKFB3Q16875 520 aaPredicted RBP16.69■□□□□ 0.26
CLIP1-216ENST00000541410 TYW1BQ6NUM6 668 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 PIK3AP1Q6ZUJ8 805 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 USP49Q70CQ1 688 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 KRI1Q8N9T8 703 aaKnown RBP16.69■□□□□ 0.26
CLIP1-216ENST00000541410 NEDD1Q8NHV4 660 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 VAT1LQ9HCJ6 419 aa16.69■□□□□ 0.26
CLIP1-216ENST00000541410 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.69■□□□□ 0.26
CLIP1-216ENST00000541410 LRRC47Q8N1G4 583 aaKnown RBP16.68■□□□□ 0.26
CLIP1-216ENST00000541410 PDILTQ8N807 584 aa16.68■□□□□ 0.26
CLIP1-216ENST00000541410 ANKS1AQ92625 1134 aa16.68■□□□□ 0.26
CLIP1-216ENST00000541410 CNKSR1Q969H4 720 aa16.68■□□□□ 0.26
CLIP1-216ENST00000541410 TCP11L1Q9NUJ3 509 aa16.68■□□□□ 0.26
CLIP1-216ENST00000541410 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.68■□□□□ 0.26
CLIP1-216ENST00000541410 STX1AQ16623 288 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 RESP18Q5W5W9 173 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 ZSCAN30Q86W11 494 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 HOMER1Q86YM7 354 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 KIAA1468Q9P260 1216 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 FBXO2Q9UK22 296 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-216ENST00000541410 SUGT1Q9Y2Z0 365 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 RGPD3A6NKT7 1758 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-216ENST00000541410 RGPD4Q7Z3J3 1758 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 KLRF2D3W0D1 207 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 FOXN1O15353 648 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 CUTAO60888 179 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 PNOCQ13519 176 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 SHROOM1Q2M3G4 852 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-216ENST00000541410 DPCR1Q3MIW9 517 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 LONRF3Q496Y0 759 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 DACT2Q5SW24 774 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 HEATR3Q7Z4Q2 680 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 C7orf43Q8WVR3 580 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 HPSEQ9Y251 543 aa16.67■□□□□ 0.26
CLIP1-216ENST00000541410 FRMPD2Q68DX3 1309 aaPredicted RBP16.67■□□□□ 0.26
CLIP1-216ENST00000541410 SF3B2Q13435 895 aaKnown RBP16.66■□□□□ 0.26
CLIP1-216ENST00000541410 UBA5Q9GZZ9 404 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 OSBPL5Q9H0X9 879 aaPredicted RBP16.66■□□□□ 0.26
CLIP1-216ENST00000541410 BRMS1Q9HCU9 246 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 KCNH3Q9ULD8 1083 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 TRIM75PA6NK02 468 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 USP17L5A8MUK1 530 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 PPIP5K2O43314 1243 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 ATP2B2Q01814 1243 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 HHIPL2Q6UWX4 724 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 TNFRSF25Q93038 417 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 CSRNP2Q9H175 543 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 SERPINB13Q9UIV8 391 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 QSER1Q2KHR3 1735 aa16.66■□□□□ 0.26
CLIP1-216ENST00000541410 MPHOSPH10O00566 681 aaKnown RBP16.65■□□□□ 0.26
CLIP1-216ENST00000541410 PTPREP23469 700 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 MSNP26038 577 aaKnown RBP16.65■□□□□ 0.26
CLIP1-216ENST00000541410 GABPAQ06546 454 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 IQCB1Q15051 598 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 STRIP1Q5VSL9 837 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 WWC2Q6AWC2 1192 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 CCDC39Q9UFE4 941 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 PALM3A6NDB9 673 aaPredicted RBP16.65■□□□□ 0.26
CLIP1-216ENST00000541410 YDJCA8MPS7 323 aa16.65■□□□□ 0.26
CLIP1-216ENST00000541410 ZSCAN29Q8IWY8 852 aaPredicted RBP16.65■□□□□ 0.26
CLIP1-216ENST00000541410 POLR2DO15514 142 aaKnown RBP16.64■□□□□ 0.25
CLIP1-216ENST00000541410 PARP1P09874 1014 aaKnown RBP16.64■□□□□ 0.25
CLIP1-216ENST00000541410 MCM7P33993 719 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 CCDC178Q5BJE1 867 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 GRAMD1CQ8IYS0 662 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 TRIM5Q9C035 493 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 TTC12Q9H892 705 aaPredicted RBP16.64■□□□□ 0.25
CLIP1-216ENST00000541410 ANO10Q9NW15 660 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 CLIP2Q9UDT6 1046 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 DDTLA6NHG4 134 aaPredicted RBP16.64■□□□□ 0.25
CLIP1-216ENST00000541410 RAD21O60216 631 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 BAG6P46379 1132 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 ZRSR1Q15695 479 aaKnown RBP16.64■□□□□ 0.25
CLIP1-216ENST00000541410 TTC38Q5R3I4 469 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 AOPEPQ8N6M6 819 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 CNNM3Q8NE01 707 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 EPSTI1Q96J88 318 aa16.64■□□□□ 0.25
CLIP1-216ENST00000541410 TOP1P11387 765 aaKnown RBP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 SHMT1P34896 483 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 METTL16Q86W50 562 aaKnown RBP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 DHX40Q8IX18 779 aaKnown RBP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 KLHL34Q8N239 644 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 ZDHHC15Q96MV8 337 aa16.63■□□□□ 0.25
CLIP1-216ENST00000541410 TDRD3Q9H7E2 651 aaKnown RBP16.63■□□□□ 0.25
CLIP1-216ENST00000541410 MTMR4Q9NYA4 1195 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms