RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 USP17L18D6R9N7 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L22D6RA61 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L17D6RBQ6 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L19D6RCP7 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L20D6RJB6 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 KDM4AO75164 1064 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 ATP2B2Q01814 1243 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 USP17L24Q0WX57 530 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 SART3Q15020 963 aaKnown RBP22.12■■□□□ 1.13
VPS33A-205ENST00000541169 CREB3L3Q68CJ9 461 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 GMCL1P1Q8NEA9 526 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 INCENPQ9NQS7 918 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 STX8Q9UNK0 236 aa22.12■■□□□ 1.13
VPS33A-205ENST00000541169 E7EWF7 191 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 SLC27A2O14975 620 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 WDR46O15213 610 aaKnown RBP22.11■■□□□ 1.13
VPS33A-205ENST00000541169 TLR2O60603 784 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 MCCP23508 829 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 IRX3P78415 501 aaPredicted RBP22.11■■□□□ 1.13
VPS33A-205ENST00000541169 UBAC1Q9BSL1 405 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 TACC3Q9Y6A5 838 aa22.11■■□□□ 1.13
VPS33A-205ENST00000541169 MYH4Q9Y623 1939 aa22.1■■□□□ 1.13
VPS33A-205ENST00000541169 B4E1Z4 1266 aa22.1■■□□□ 1.13
VPS33A-205ENST00000541169 HMGB1P09429 215 aaKnown RBP22.1■■□□□ 1.13
VPS33A-205ENST00000541169 TOP1P11387 765 aaKnown RBP22.1■■□□□ 1.13
VPS33A-205ENST00000541169 VCAM1P19320 739 aa22.1■■□□□ 1.13
VPS33A-205ENST00000541169 GCLCP48506 637 aaPredicted RBP22.1■■□□□ 1.13
VPS33A-205ENST00000541169 IL17RBQ9NRM6 502 aa22.1■■□□□ 1.13
VPS33A-205ENST00000541169 ZSWIM5Q9P217 1185 aa22.1■■□□□ 1.13
VPS33A-205ENST00000541169 ERICH2A1L162 156 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 HSPA4P34932 840 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 CRHR2Q13324 411 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 ZYXQ15942 572 aaKnown RBP22.09■■□□□ 1.13
VPS33A-205ENST00000541169 TREML2Q5T2D2 321 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 SMCR8Q8TEV9 937 aaPredicted RBP22.09■■□□□ 1.13
VPS33A-205ENST00000541169 ANKS1AQ92625 1134 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 ZSCAN10Q96SZ4 725 aaPredicted RBP22.09■■□□□ 1.13
VPS33A-205ENST00000541169 HOXC10Q9NYD6 342 aa22.09■■□□□ 1.13
VPS33A-205ENST00000541169 MYPNQ86TC9 1320 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 F5H6K3 240 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 KLRC3Q07444 240 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 ARHGEF6Q15052 776 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 RCSD1Q6JBY9 416 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 CATSPERGQ6ZRH7 1159 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 KCNB2Q92953 911 aa22.08■■□□□ 1.13
VPS33A-205ENST00000541169 FOXN1O15353 648 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 MCM5P33992 734 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 COG2Q14746 738 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 CLEC10AQ8IUN9 316 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 TMTC2Q8N394 836 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 GMCL1Q96IK5 515 aa22.07■■□□□ 1.12
VPS33A-205ENST00000541169 ASCC2Q9H1I8 757 aaPredicted RBP22.07■■□□□ 1.12
VPS33A-205ENST00000541169 RPAP3Q9H6T3 665 aaPredicted RBP22.07■■□□□ 1.12
VPS33A-205ENST00000541169 WDR19Q8NEZ3 1342 aa22.06■■□□□ 1.12
VPS33A-205ENST00000541169 TBC1D8O95759 1140 aa22.06■■□□□ 1.12
VPS33A-205ENST00000541169 LBX2Q6XYB7 198 aa22.06■■□□□ 1.12
VPS33A-205ENST00000541169 USP26Q9BXU7 913 aa22.06■■□□□ 1.12
VPS33A-205ENST00000541169 PRDM10Q9NQV6 1147 aa22.06■■□□□ 1.12
VPS33A-205ENST00000541169 GPR25O00155 361 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 NMT2O60551 498 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 HSPA8P11142 646 aaKnown RBP22.05■■□□□ 1.12
VPS33A-205ENST00000541169 PSMA5P28066 241 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 MB21D1Q8N884 522 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 TMEM87BQ96K49 555 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 TANGO6Q9C0B7 1094 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 KAT14Q9H8E8 782 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 TNKSO95271 1327 aa22.05■■□□□ 1.12
VPS33A-205ENST00000541169 RAD21O60216 631 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 FKTNO75072 461 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 NDUFB10O96000 172 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 SLFN13Q68D06 897 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 C17orf99Q6UX52 265 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 MB21D2Q8IYB1 491 aaPredicted RBP22.04■■□□□ 1.12
VPS33A-205ENST00000541169 DCAF4Q8WV16 495 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 NEK1Q96PY6 1258 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 TMEM47Q9BQJ4 181 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 ADGRA2Q96PE1 1338 aa22.04■■□□□ 1.12
VPS33A-205ENST00000541169 PLA2G6O60733 806 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 FDX1P10109 184 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 CYP2C8P10632 490 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 SLC1A4P43007 532 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 HERVK_113P62684 666 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 SP3Q02447 781 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 KIF22Q14807 665 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 FAM110CQ1W6H9 321 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 IFIT1BQ5T764 474 aaKnown RBP22.03■■□□□ 1.12
VPS33A-205ENST00000541169 STOX1Q6ZVD7 989 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 SPICE1Q8N0Z3 855 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 LRRC47Q8N1G4 583 aaKnown RBP22.03■■□□□ 1.12
VPS33A-205ENST00000541169 ENAHQ8N8S7 591 aaPredicted RBP22.03■■□□□ 1.12
VPS33A-205ENST00000541169 ERO1AQ96HE7 468 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 FEM1BQ9UK73 627 aa22.03■■□□□ 1.12
VPS33A-205ENST00000541169 IFIT3O14879 490 aaKnown RBP22.02■■□□□ 1.12
VPS33A-205ENST00000541169 FLOT1O75955 427 aa22.02■■□□□ 1.12
VPS33A-205ENST00000541169 GNRH1P01148 92 aa22.02■■□□□ 1.12
VPS33A-205ENST00000541169 BMP3P12645 472 aa22.02■■□□□ 1.12
VPS33A-205ENST00000541169 CHURC1Q8WUH1 139 aa22.02■■□□□ 1.12
VPS33A-205ENST00000541169 RABGAP1Q9Y3P9 1069 aa22.02■■□□□ 1.12
VPS33A-205ENST00000541169 LBX1P52954 281 aa22.01■■□□□ 1.11
VPS33A-205ENST00000541169 ANAPC15P60006 121 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms