RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NECAB1Q8N987 351 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 DPF2Q92785 391 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 JAKMIP1Q96N16 626 aaKnown RBP10.6□□□□□ -0.71
CLIP1-214ENST00000540539 BPIFA3Q9BQP9 254 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 FAM167BQ9BTA0 163 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 OSBPL1AQ9BXW6 950 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 GOLPH3LQ9H4A5 285 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 WDR35Q9P2L0 1181 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 C2CD2Q9Y426 696 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 RGPD5Q99666 1765 aa10.6□□□□□ -0.71
CLIP1-214ENST00000540539 DPPA5A6NC42 116 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 GOLGA8KD6RF30 607 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 MBD4O95243 580 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 MAP4K4O95819 1239 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-214ENST00000540539 LMOD1P29536 600 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-214ENST00000540539 TUBB2AQ13885 445 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 NCAPHQ15003 741 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 CHRNA2Q15822 529 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 TMEM110Q86TL2 294 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 ELOA2Q8IYF1 753 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-214ENST00000540539 EXOC8Q8IYI6 725 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 MYCBPAPQ8TBZ2 947 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 PLEKHF1Q96S99 279 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 TUBB2BQ9BVA1 445 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 SELENOOQ9BVL4 669 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 OCEL1Q9H607 264 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 ZWILCHQ9H900 591 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 SENP2Q9HC62 589 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 PRDM11Q9NQV5 511 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 IL13P35225 146 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 SCTRP47872 440 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 EIF4A2Q14240 407 aaKnown RBP10.59□□□□□ -0.71
CLIP1-214ENST00000540539 PABPC1LQ4VXU2 614 aaKnown RBP10.59□□□□□ -0.71
CLIP1-214ENST00000540539 SPECC1Q5M775 1068 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 DPY19L2Q6NUT2 758 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 CNKSR1Q969H4 720 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 CCT8L2Q96SF2 557 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 POLD4Q9HCU8 107 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 LZTFL1Q9NQ48 299 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 TBC1D7Q9P0N9 293 aa10.59□□□□□ -0.71
CLIP1-214ENST00000540539 COL18A1P39060 1754 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 GPR75-ASB3A0A0A6YYF3 556 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 EIF4E1BA6NMX2 242 aaKnown RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 DIAPH2O60879 1101 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 LGR5O75473 907 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 A1BGP04217 495 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 ATP1A2P50993 1020 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 SLC7A5Q01650 507 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 PABPC4Q13310 644 aaKnown RBP eCLIP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 WHAMMP3Q1A5X7 153 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 CEP85Q6P2H3 762 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 VSTM4Q8IW00 320 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 CCDC148Q8NFR7 591 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 LTV1Q96GA3 475 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 CDC5LQ99459 802 aaKnown RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 PREBQ9HCU5 417 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 SH2B1Q9NRF2 756 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 FANCLQ9NW38 375 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 GALNT8Q9NY28 637 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 AXIN2Q9Y2T1 843 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 ASB3Q9Y575 518 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 A0A0U1RQJ8 604 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 SPDYE5A6NIY4 337 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 NUTM2BA6NNL0 878 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 NUTM2EB1AL46 878 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 TMEM232C9JQI7 657 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 STX10O60499 249 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 E2F6O75461 281 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 TOP1P11387 765 aaKnown RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 SEC24CP53992 1094 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 USP14P54578 494 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 ENOX2Q16206 610 aaKnown RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 GET4Q7L5D6 327 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 NLRP14Q86W24 1093 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 NUTM2AQ8IVF1 878 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 ATRIPQ8WXE1 791 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 RILPL2Q969X0 211 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 FAM81BQ96LP2 452 aa10.58□□□□□ -0.72
CLIP1-214ENST00000540539 NOP53Q9NZM5 478 aaKnown RBP10.58□□□□□ -0.72
CLIP1-214ENST00000540539 RASSF10A6NK89 507 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 F8VZ95 297 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 LUC7L3O95232 432 aaKnown RBP10.57□□□□□ -0.72
CLIP1-214ENST00000540539 PARP1P09874 1014 aaKnown RBP10.57□□□□□ -0.72
CLIP1-214ENST00000540539 PDCP20941 246 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 NEXNQ0ZGT2 675 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 PTGISQ16647 500 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 TTMPQ5BVD1 217 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 ARL8AQ96BM9 186 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 HSD3B7Q9H2F3 369 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 CTAGE9A4FU28 777 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 SMAPO00193 183 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 N4BP3O15049 544 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 KIF5CO60282 957 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 GIGYF1O75420 1035 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-214ENST00000540539 UBASH3AP57075 661 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 MXRA7P84157 204 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 GUCY1A3Q02108 690 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 TSNAXIP1Q2TAA8 658 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 ZNF569Q5MCW4 686 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms