RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 USP17L18D6R9N7 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L22D6RA61 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L17D6RBQ6 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L19D6RCP7 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L20D6RJB6 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 IL1R1P14778 569 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 MARK3P27448 753 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 MCM7P33993 719 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L24Q0WX57 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 GRIPAP1Q4V328 841 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 RGMBQ6NW40 437 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L6PQ6QN14 398 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 ZDHHC15Q96MV8 337 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 SGIP1Q9BQI5 828 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 TMEM47Q9BQJ4 181 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 EFCC1Q9HA90 598 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 PLCH1Q4KWH8 1693 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 GPR75-ASB3A0A0A6YYF3 556 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 CCDC196A0A1B0GTZ2 297 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 FZD9O00144 591 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 EIF5BO60841 1220 aaKnown RBP8.34□□□□□ -1.07
MSH6-209ENST00000538136 PLEKHA8P1O95397 391 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 ERCC3P19447 782 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 SNAPC2Q13487 334 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 RABEP1Q15276 862 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 HHIPL2Q6UWX4 724 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 UTYO14607 1347 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 KNL1Q8NG31 2342 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 POTEB2H3BUK9 544 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 NOP56O00567 594 aaKnown RBP8.34□□□□□ -1.07
MSH6-209ENST00000538136 CYB5R4Q7L1T6 521 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 CENPFP49454 3210 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 PDHXO00330 501 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 NDUFB10O96000 172 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 OSBPP22059 807 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 GJB2P29033 226 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 PIK3AP1Q6ZUJ8 805 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 GLG1Q92896 1179 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 PURBQ96QR8 312 aaKnown RBP8.34□□□□□ -1.08
MSH6-209ENST00000538136 USP26Q9BXU7 913 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 LIMCH1Q9UPQ0 1083 aa8.34□□□□□ -1.08
MSH6-209ENST00000538136 HARSP12081 509 aaKnown RBP8.33□□□□□ -1.08
MSH6-209ENST00000538136 IDEP14735 1019 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 STAT2P52630 851 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 ZNF174Q15697 407 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 C12orf60Q5U649 245 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 CHURC1Q8WUH1 139 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 AGBL1Q96MI9 1066 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 DOT1LQ8TEK3 1739 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 ELNP15502 786 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 SPDYE2Q495Y8 402 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 LONRF3Q496Y0 759 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 PRAMEF19Q5SWL8 479 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 ARHGEF16Q5VV41 709 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 MYH14Q7Z406 1995 aaKnown RBP8.33□□□□□ -1.08
MSH6-209ENST00000538136 PSMC4P43686 418 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 LBX1P52954 281 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 FAM117BQ6P1L5 589 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 TMEM179Q6ZVK1 233 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 TMX3Q96JJ7 454 aa8.33□□□□□ -1.08
MSH6-209ENST00000538136 PLEKHG2Q9H7P9 1386 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 COL9A3Q14050 684 aaPredicted RBP8.32□□□□□ -1.08
MSH6-209ENST00000538136 FBXO11Q86XK2 927 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 P2RX7Q99572 595 aaKnown RBP8.32□□□□□ -1.08
MSH6-209ENST00000538136 SDF4Q9BRK5 362 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.32□□□□□ -1.08
MSH6-209ENST00000538136 CDC25AP30304 524 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 STAT3P40763 770 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 CYP4A11Q02928 519 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 PABPC4Q13310 644 aaKnown RBP eCLIP8.32□□□□□ -1.08
MSH6-209ENST00000538136 ERO1BQ86YB8 467 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 STAMQ92783 540 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 SUGCTQ9HAC7 445 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 CNPY2Q9Y2B0 182 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 PARP4Q9UKK3 1724 aaKnown RBP8.32□□□□□ -1.08
MSH6-209ENST00000538136 TOP1P11387 765 aaKnown RBP8.32□□□□□ -1.08
MSH6-209ENST00000538136 CAP2P40123 477 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 CCDC17Q96LX7 622 aa8.32□□□□□ -1.08
MSH6-209ENST00000538136 PXDNLA1KZ92 1463 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 SMCO2A6NFE2 343 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 TXKP42681 527 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 ANKRD1Q15327 319 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 C8orf34Q49A92 452 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 FANCBQ8NB91 859 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 GJA10Q969M2 543 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 MLXIPQ9HAP2 919 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 ZFYVE28Q9HCC9 887 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 CDKL5O76039 1030 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 CYP2C19P33261 490 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 VEGFBP49765 207 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 METTL13Q8N6R0 699 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 ENAHQ8N8S7 591 aaPredicted RBP8.31□□□□□ -1.08
MSH6-209ENST00000538136 RIOK1Q9BRS2 568 aaKnown RBP8.31□□□□□ -1.08
MSH6-209ENST00000538136 RNF146Q9NTX7 359 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 TOPAZ1Q8N9V7 1692 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 HMGB1P09429 215 aaKnown RBP8.31□□□□□ -1.08
MSH6-209ENST00000538136 RASA1P20936 1047 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 RHBDL3P58872 404 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 PRR16Q569H4 304 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 STOX1Q6ZVD7 989 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms