RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 FAM173BQ6P4H8 233 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 NUCKS1Q9H1E3 243 aaKnown RBP20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 CTSWP56202 376 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 ATP11AP98196 1134 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 LRMPQ12912 555 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 RPS6KA1Q15418 735 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 DPY19L2Q6NUT2 758 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 PEX26Q7Z412 305 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 CACYBPQ9HB71 228 aaKnown RBP20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 TSKSQ9UJT2 592 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 LONRF3Q496Y0 759 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 DCAF15Q66K64 600 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 TESK2Q96S53 571 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 DSCC1Q9BVC3 393 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 ST7Q9NRC1 585 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 I3L4J1 428 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 ALAS1P13196 640 aa20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 ZNF496Q96IT1 587 aaPredicted RBP20.09■□□□□ 0.81
SFSWAP-203ENST00000535236 E7EWF7 191 aa20.08■□□□□ 0.81
SFSWAP-203ENST00000535236 ERVV-2B6SEH9 535 aa20.08■□□□□ 0.81
SFSWAP-203ENST00000535236 PABPC4Q13310 644 aaKnown RBP eCLIP20.08■□□□□ 0.81
SFSWAP-203ENST00000535236 MCTP2Q6DN12 878 aa20.08■□□□□ 0.81
SFSWAP-203ENST00000535236 FLAD1Q8NFF5 587 aa20.08■□□□□ 0.81
SFSWAP-203ENST00000535236 PCDHB13Q9Y5F0 798 aa20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 PALM3A6NDB9 673 aaPredicted RBP20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 RIOK3O14730 519 aaKnown RBP20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 MAN1A1P33908 653 aa20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 CCDC94Q9BW85 323 aaPredicted RBP20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 RUFY4Q6ZNE9 571 aa20.08■□□□□ 0.8
SFSWAP-203ENST00000535236 PNMA6EA0A0J9YXQ4 647 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 ZNF131P52739 623 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 GADL1Q6ZQY3 521 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 GPBP1Q86WP2 473 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 MRPL11Q9Y3B7 192 aaKnown RBP20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 STAMQ92783 540 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 IMPACTQ9P2X3 320 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 KDM2BQ8NHM5 1336 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 KRT15P19012 456 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 CYP2J2P51589 502 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 B4GALNT4Q76KP1 1039 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 GTF3C6Q969F1 213 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 ATP2B4P23634 1241 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 CNGA1P29973 690 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 LIG4P49917 911 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 PSMD6Q15008 389 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 BSPRYQ5W0U4 402 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 CCDC62Q6P9F0 684 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 ZNF654Q8IZM8 581 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 CBX8Q9HC52 389 aa20.07■□□□□ 0.8
SFSWAP-203ENST00000535236 USP17L12C9JPN9 530 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 USP17L21D6R901 530 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 POLR2MP0CAP2 368 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 CFAP221Q4G0U5 840 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 TCP10L2B9ZVM9 353 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 ZNF75DP51815 510 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 SATB1Q01826 763 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 TTC31Q49AM3 519 aaPredicted RBP20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 RRAGAQ7L523 313 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 CACNA2D3Q8IZS8 1091 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 PSTPIP2Q9H939 334 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 TNNC2P02585 160 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 ATF7P17544 494 aaPredicted RBP20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 EP400NLQ6ZTU2 488 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 IQCDQ96DY2 449 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 FAM207AQ9NSI2 230 aaPredicted RBP20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 GOLGA6CA6NDK9 693 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 GOLGA6BA6NDN3 693 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 GOLGA6DP0CG33 693 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 ATP5JP18859 108 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 PAK2Q13177 524 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 MAP7Q14244 749 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 C2CD5Q86YS7 1000 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 LSM14BQ9BX40 385 aaKnown RBP20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 VPS37BQ9H9H4 285 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 GOLGA6AQ9NYA3 693 aa20.06■□□□□ 0.8
SFSWAP-203ENST00000535236 MCUR1Q96AQ8 359 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 FAM193BQ96PV7 902 aaPredicted RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 ZSCAN10Q96SZ4 725 aaPredicted RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 PSMB7Q99436 277 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 ADPGKQ9BRR6 497 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 SLAIN2Q9P270 581 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 FRMPD2Q68DX3 1309 aaPredicted RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 OATP04181 439 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 KRT81Q14533 505 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 PRR16Q569H4 304 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 RSRC1Q96IZ7 334 aaKnown RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 KIF11P52732 1056 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 TYW1BQ6NUM6 668 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 VCX3BQ9H321 246 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 NLRC4Q9NPP4 1024 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 NEURL1BA8MQ27 555 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 SEC24BO95487 1268 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 TBC1D8O95759 1140 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 ABL1P00519 1130 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 MCF2L2Q86YR7 1114 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 DCPSQ96C86 337 aaKnown RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 SLF1Q9BQI6 1058 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 CAPN9O14815 690 aa20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 XRCC5P13010 732 aaKnown RBP20.05■□□□□ 0.8
SFSWAP-203ENST00000535236 U2AF2P26368 475 aaKnown RBP eCLIP20.05■□□□□ 0.85e-9■■■■■ 35.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms