RNA–Protein interactions for RNA: ENST00000534551.2

VPS11-205, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS11, Length 585 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-205ENST00000534551 MTMR4Q9NYA4 1195 aa16.6■□□□□ 0.25
VPS11-205ENST00000534551 TMX2Q9Y320 296 aa16.6■□□□□ 0.25
VPS11-205ENST00000534551 U3KPZ7 1027 aaPredicted RBP16.6■□□□□ 0.25
VPS11-205ENST00000534551 COL13A1Q5TAT6 717 aaPredicted RBP16.59■□□□□ 0.25
VPS11-205ENST00000534551 POTEEQ6S8J3 1075 aa16.59■□□□□ 0.25
VPS11-205ENST00000534551 CLIP2Q9UDT6 1046 aa16.59■□□□□ 0.25
VPS11-205ENST00000534551 CTNNA3Q9UI47 895 aa16.59■□□□□ 0.25
VPS11-205ENST00000534551 CENPFP49454 3210 aa16.58■□□□□ 0.25
VPS11-205ENST00000534551 TLR2O60603 784 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 KDM4AO75164 1064 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 NDUFB10O96000 172 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 USP14P54578 494 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 IRX3P78415 501 aaPredicted RBP16.58■□□□□ 0.24
VPS11-205ENST00000534551 CASC1Q6TDU7 716 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 KIAA1211Q6ZU35 1233 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 CD99L2Q8TCZ2 262 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 SMCR8Q8TEV9 937 aaPredicted RBP16.58■□□□□ 0.24
VPS11-205ENST00000534551 ARHGAP39Q9C0H5 1083 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 NYAP2Q9P242 653 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 MTMR7Q9Y216 660 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 SLC45A1Q9Y2W3 748 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 PLXNB2O15031 1838 aa16.58■□□□□ 0.24
VPS11-205ENST00000534551 SLC27A2O14975 620 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 TTLL1O95922 423 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 CTGFP29279 349 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
VPS11-205ENST00000534551 C17orf99Q6UX52 265 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 CYB5R4Q7L1T6 521 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 ANKRD13CQ8N6S4 541 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 TANGO6Q9C0B7 1094 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 RNF41Q9H4P4 317 aaPredicted RBP16.57■□□□□ 0.24
VPS11-205ENST00000534551 PRDM10Q9NQV6 1147 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 FBXO28Q9NVF7 368 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 STX8Q9UNK0 236 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 GTF3C3Q9Y5Q9 886 aa16.57■□□□□ 0.24
VPS11-205ENST00000534551 FKTNO75072 461 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 BCRP11274 1271 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 FAM83BQ5T0W9 1011 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 CREB3L3Q68CJ9 461 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 P2RX7Q99572 595 aaKnown RBP16.56■□□□□ 0.24
VPS11-205ENST00000534551 SH2D4AQ9H788 454 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 GOPCQ9HD26 462 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 TXNRD2Q9NNW7 524 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 PNMA3Q9UL41 463 aa16.56■□□□□ 0.24
VPS11-205ENST00000534551 E7EWF7 191 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 PCP11498 1178 aaKnown RBP16.55■□□□□ 0.24
VPS11-205ENST00000534551 OSBPP22059 807 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 HOXA7P31268 230 aaPredicted RBP16.55■□□□□ 0.24
VPS11-205ENST00000534551 HERVK_113P62684 666 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 NECTIN1Q15223 517 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 RCSD1Q6JBY9 416 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 CATSPERGQ6ZRH7 1159 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 CHST3Q7LGC8 479 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 ESR2Q92731 530 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 PAGR1Q9BTK6 254 aa16.55■□□□□ 0.24
VPS11-205ENST00000534551 SMCHD1A6NHR9 2005 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 SPDYE16A6NNV3 312 aaPredicted RBP16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L15C9J2P7 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L13C9JLJ4 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L11C9JVI0 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L18D6R9N7 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L22D6RA61 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L17D6RBQ6 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L19D6RCP7 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L20D6RJB6 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 F5H6K3 240 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 WDR46O15213 610 aaKnown RBP16.54■□□□□ 0.24
VPS11-205ENST00000534551 NOVP48745 357 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 SP3Q02447 781 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 KLRC3Q07444 240 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 USP17L24Q0WX57 530 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 PABPC4Q13310 644 aaKnown RBP eCLIP16.54■□□□□ 0.24
VPS11-205ENST00000534551 LPAR1Q92633 364 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 ZSWIM5Q9P217 1185 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 MYH6P13533 1939 aa16.54■□□□□ 0.24
VPS11-205ENST00000534551 TNKSO95271 1327 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 CNMDO75829 334 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 ANTXR2P58335 489 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 NOM1Q5C9Z4 860 aaKnown RBP16.53■□□□□ 0.24
VPS11-205ENST00000534551 SLFN13Q68D06 897 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 MB21D2Q8IYB1 491 aaPredicted RBP16.53■□□□□ 0.24
VPS11-205ENST00000534551 RASEFQ8IZ41 740 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 ATG4CQ96DT6 458 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 TMEM47Q9BQJ4 181 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 SENP2Q9HC62 589 aa16.53■□□□□ 0.24
VPS11-205ENST00000534551 ISY1Q9ULR0 285 aaKnown RBP16.53■□□□□ 0.24
VPS11-205ENST00000534551 FLOT1O75955 427 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 LACTBP83111 547 aaPredicted RBP16.52■□□□□ 0.24
VPS11-205ENST00000534551 ENAHQ8N8S7 591 aaPredicted RBP16.52■□□□□ 0.24
VPS11-205ENST00000534551 GMCL1P1Q8NEA9 526 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 MKL1Q969V6 931 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 KRT23Q9C075 422 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 CNNM2Q9H8M5 875 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 GPHNQ9NQX3 736 aaPredicted RBP16.52■□□□□ 0.24
VPS11-205ENST00000534551 TCP11L1Q9NUJ3 509 aa16.52■□□□□ 0.24
VPS11-205ENST00000534551 FRMPD2Q68DX3 1309 aaPredicted RBP16.51■□□□□ 0.23
VPS11-205ENST00000534551 MCCP23508 829 aa16.51■□□□□ 0.23
VPS11-205ENST00000534551 FAM110CQ1W6H9 321 aa16.51■□□□□ 0.23
VPS11-205ENST00000534551 KCTD1Q719H9 257 aa16.51■□□□□ 0.23
VPS11-205ENST00000534551 RALYLQ86SE5 291 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms