RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 CUL4AQ13619 759 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 RTN1Q16799 776 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 NOL9Q5SY16 702 aaKnown RBP16.59■□□□□ 0.25
TRIM3-212ENST00000533064 CPLX2Q6PUV4 134 aaKnown RBP16.59■□□□□ 0.25
TRIM3-212ENST00000533064 LRRC47Q8N1G4 583 aaKnown RBP16.59■□□□□ 0.25
TRIM3-212ENST00000533064 MKL1Q969V6 931 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 AS3MTQ9HBK9 375 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 CHMP5Q9NZZ3 219 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 CIZ1Q9ULV3 898 aaPredicted RBP16.59■□□□□ 0.25
TRIM3-212ENST00000533064 SYNPO2Q9UMS6 1093 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 MTMR7Q9Y216 660 aa16.59■□□□□ 0.25
TRIM3-212ENST00000533064 RAD21O60216 631 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 RXRAP19793 462 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 YY1P25490 414 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 KIF5BP33176 963 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 SCRN1Q12765 414 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 TROAPQ12815 778 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 CCDC144CPQ8IYA2 1237 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 ANKRD13AQ8IZ07 590 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 FANCBQ8NB91 859 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 INTS4Q96HW7 963 aaKnown RBP16.58■□□□□ 0.24
TRIM3-212ENST00000533064 MAP3K14Q99558 947 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 RBM28Q9NW13 759 aaKnown RBP16.58■□□□□ 0.24
TRIM3-212ENST00000533064 HPS5Q9UPZ3 1129 aa16.58■□□□□ 0.24
TRIM3-212ENST00000533064 NID2Q14112 1375 aa16.57■□□□□ 0.24
TRIM3-212ENST00000533064 FKBP1BP68106 108 aa16.57■□□□□ 0.24
TRIM3-212ENST00000533064 MAP3K11Q16584 847 aa16.57■□□□□ 0.24
TRIM3-212ENST00000533064 FEZ1Q99689 392 aa16.57■□□□□ 0.24
TRIM3-212ENST00000533064 NCOA5Q9HCD5 579 aaKnown RBP16.57■□□□□ 0.24
TRIM3-212ENST00000533064 GOPCQ9HD26 462 aa16.57■□□□□ 0.24
TRIM3-212ENST00000533064 CDKL5O76039 1030 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 CELF2O95319 508 aaKnown RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 C2orf69Q8N8R5 385 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 KIF3CO14782 793 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 PARP1P09874 1014 aaKnown RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 PTPRAP18433 802 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 VGLL4Q14135 290 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 LLPHQ9BRT6 129 aaKnown RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 GBA2Q9HCG7 927 aaPredicted RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
TRIM3-212ENST00000533064 SMC3Q9UQE7 1217 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 TMX2Q9Y320 296 aa16.56■□□□□ 0.24
TRIM3-212ENST00000533064 UNCXA6NJT0 531 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 ITGBL1O95965 494 aaPredicted RBP16.55■□□□□ 0.24
TRIM3-212ENST00000533064 GNAQP50148 359 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 GRM4Q14833 912 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 SIAH1Q8IUQ4 282 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 SMC1BQ8NDV3 1235 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 GMCL1P1Q8NEA9 526 aa16.55■□□□□ 0.24
TRIM3-212ENST00000533064 CWC22Q9HCG8 908 aaKnown RBP16.55■□□□□ 0.24
TRIM3-212ENST00000533064 ISY1Q9ULR0 285 aaKnown RBP16.55■□□□□ 0.24
TRIM3-212ENST00000533064 PARP14Q460N5 1801 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 A0A1W2PRG0 241 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 USP17L10C9JJH3 530 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 PDHBP11177 359 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 CDC27P30260 824 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ADD1P35611 737 aaKnown RBP16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ECE1P42892 770 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 USP14P54578 494 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 FMR1Q06787 632 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ASPRV1Q53RT3 343 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 SLFN13Q68D06 897 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 MOB2Q70IA6 237 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 CCDC84Q86UT8 332 aaPredicted RBP16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ZNF280CQ8ND82 737 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ACER1Q8TDN7 264 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 DCAF4Q8WV16 495 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ANP32EQ9BTT0 268 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 WDR18Q9BV38 432 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 SNCAIPQ9Y6H5 919 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 ZHX2Q9Y6X8 837 aa16.54■□□□□ 0.24
TRIM3-212ENST00000533064 F5H6K3 240 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 UBE2Q2LH0YL09 131 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 SLC1A4P43007 532 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 HMGN5P82970 282 aaKnown RBP16.53■□□□□ 0.24
TRIM3-212ENST00000533064 KLRC3Q07444 240 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 ST3GAL1Q11201 340 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 CCDC96Q2M329 555 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 GPATCH4Q5T3I0 446 aaKnown RBP16.53■□□□□ 0.24
TRIM3-212ENST00000533064 VCPKMTQ9H867 229 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 ELP3Q9H9T3 547 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 KIF3AQ9Y496 699 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 TOMM70O94826 608 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 SPP2Q13103 211 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 ZYXQ15942 572 aaKnown RBP16.53■□□□□ 0.24
TRIM3-212ENST00000533064 USP17L2Q6R6M4 530 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 ERO1BQ86YB8 467 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 TRIM22Q8IYM9 498 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 RBM46Q8TBY0 533 aaKnown RBP16.53■□□□□ 0.24
TRIM3-212ENST00000533064 LZTS2Q9BRK4 669 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 KIAA1683Q9H0B3 1180 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 MAD2L2Q9UI95 211 aa16.53■□□□□ 0.24
TRIM3-212ENST00000533064 LOC285556D6RIA3 1793 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 SNHG28P0DPA3 235 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 IFNAR1P17181 557 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 AKAP17AQ02040 695 aaKnown RBP16.52■□□□□ 0.23
TRIM3-212ENST00000533064 PPATQ06203 517 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms