RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 IQCA1Q86XH1 822 aa25.12■■□□□ 1.61
CAPN1-220ENST00000530567 ZSCAN10Q96SZ4 725 aaPredicted RBP25.12■■□□□ 1.61
CAPN1-220ENST00000530567 WBP1LQ9NX94 342 aa25.12■■□□□ 1.61
CAPN1-220ENST00000530567 TMOD4Q9NZQ9 345 aa25.12■■□□□ 1.61
CAPN1-220ENST00000530567 EIF5BO60841 1220 aaKnown RBP25.12■■□□□ 1.61
CAPN1-220ENST00000530567 PPP4R3BQ5MIZ7 849 aa25.12■■□□□ 1.61
CAPN1-220ENST00000530567 ENAHQ8N8S7 591 aaPredicted RBP25.12■■□□□ 1.61
CAPN1-220ENST00000530567 TNKSO95271 1327 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 KRT32Q14532 448 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 SEC23AQ15436 765 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 CHST3Q7LGC8 479 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 ANKS1AQ92625 1134 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 NEK1Q96PY6 1258 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 TMEM47Q9BQJ4 181 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 ZCCHC17Q9NP64 241 aaKnown RBP25.11■■□□□ 1.61
CAPN1-220ENST00000530567 RNF186Q9NXI6 227 aa25.11■■□□□ 1.61
CAPN1-220ENST00000530567 PDHXO00330 501 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 NDUFB10O96000 172 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 DGKHQ86XP1 1220 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 SPICE1Q8N0Z3 855 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 GMCL1P1Q8NEA9 526 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 LPAR1Q92633 364 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 TTC14Q96N46 770 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 UBAC1Q9BSL1 405 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 SLC45A1Q9Y2W3 748 aa25.1■■□□□ 1.61
CAPN1-220ENST00000530567 F5H6K3 240 aa25.09■■□□□ 1.61
CAPN1-220ENST00000530567 TOP1P11387 765 aaKnown RBP25.09■■□□□ 1.61
CAPN1-220ENST00000530567 MCCP23508 829 aa25.09■■□□□ 1.61
CAPN1-220ENST00000530567 KLRC3Q07444 240 aa25.09■■□□□ 1.61
CAPN1-220ENST00000530567 GOPCQ9HD26 462 aa25.09■■□□□ 1.61
CAPN1-220ENST00000530567 PRC1O43663 620 aa25.08■■□□□ 1.61
CAPN1-220ENST00000530567 HOXA7P31268 230 aaPredicted RBP25.08■■□□□ 1.61
CAPN1-220ENST00000530567 CCDC178Q5BJE1 867 aa25.08■■□□□ 1.61
CAPN1-220ENST00000530567 OTUD7BQ6GQQ9 843 aa25.08■■□□□ 1.61
CAPN1-220ENST00000530567 ALDH1A1P00352 501 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 MCM5P33992 734 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 RASGRP2Q7LDG7 609 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 IGDCC4Q8TDY8 1250 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 JAKMIP1Q96N16 626 aaKnown RBP25.07■■□□□ 1.6
CAPN1-220ENST00000530567 CFHR5Q9BXR6 569 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 RPAP3Q9H6T3 665 aaPredicted RBP25.07■■□□□ 1.6
CAPN1-220ENST00000530567 SENP2Q9HC62 589 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 SAGE1Q9NXZ1 904 aa25.07■■□□□ 1.6
CAPN1-220ENST00000530567 RLFQ13129 1914 aa25.06■■□□□ 1.6
CAPN1-220ENST00000530567 EXOSC10Q01780 885 aaKnown RBP25.06■■□□□ 1.6
CAPN1-220ENST00000530567 IL17RAQ96F46 866 aa25.06■■□□□ 1.6
CAPN1-220ENST00000530567 R3HDMLQ9H3Y0 253 aa25.06■■□□□ 1.6
CAPN1-220ENST00000530567 GPHNQ9NQX3 736 aaPredicted RBP25.06■■□□□ 1.6
CAPN1-220ENST00000530567 PARP14Q460N5 1801 aa25.06■■□□□ 1.6
CAPN1-220ENST00000530567 ADGRA2Q96PE1 1338 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 IFIT3O14879 490 aaKnown RBP25.05■■□□□ 1.6
CAPN1-220ENST00000530567 WDR46O15213 610 aaKnown RBP25.05■■□□□ 1.6
CAPN1-220ENST00000530567 CA12O43570 354 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 TRPA1O75762 1119 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 CPA1P15085 419 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 CRHR2Q13324 411 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 TAF1CQ15572 869 aaPredicted RBP25.05■■□□□ 1.6
CAPN1-220ENST00000530567 NUP88Q99567 741 aaPredicted RBP25.05■■□□□ 1.6
CAPN1-220ENST00000530567 MTA3Q9BTC8 594 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 ASCC2Q9H1I8 757 aaPredicted RBP25.05■■□□□ 1.6
CAPN1-220ENST00000530567 WDR19Q8NEZ3 1342 aa25.05■■□□□ 1.6
CAPN1-220ENST00000530567 SH2B2O14492 632 aaPredicted RBP25.04■■□□□ 1.6
CAPN1-220ENST00000530567 CYP2C8P10632 490 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 TMEM67Q5HYA8 995 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 SLFN13Q68D06 897 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 CATSPERGQ6ZRH7 1159 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 DHX32Q7L7V1 743 aaKnown RBP25.04■■□□□ 1.6
CAPN1-220ENST00000530567 GMCL1Q96IK5 515 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 TCEANC2Q96MN5 208 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 LY9Q9HBG7 655 aa25.04■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L15C9J2P7 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L13C9JLJ4 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L11C9JVI0 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L18D6R9N7 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L22D6RA61 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L17D6RBQ6 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L19D6RCP7 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L20D6RJB6 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 RAD21O60216 631 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 ANAPC15P60006 121 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 USP17L24Q0WX57 530 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 PABPC4Q13310 644 aaKnown RBP eCLIP25.03■■□□□ 1.67e-7■■□□□ 12
CAPN1-220ENST00000530567 FAM83BQ5T0W9 1011 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 IFIT1BQ5T764 474 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 TMEM87BQ96K49 555 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 PARK7Q99497 189 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 LRRC2Q9BYS8 371 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 BACH2Q9BYV9 841 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 TBC1D8O95759 1140 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 HMGB1P09429 215 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 HSPA1AP0DMV8 641 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 HSPA1BP0DMV9 641 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 SART3Q15020 963 aaKnown RBP25.03■■□□□ 1.6
CAPN1-220ENST00000530567 PNMA1Q8ND90 353 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 TM6SF1Q9BZW5 370 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 KAT14Q9H8E8 782 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 PNMA3Q9UL41 463 aa25.03■■□□□ 1.6
CAPN1-220ENST00000530567 SNHG28P0DPA3 235 aa25.02■■□□□ 1.6
CAPN1-220ENST00000530567 CASTP20810 708 aaKnown RBP25.02■■□□□ 1.6
CAPN1-220ENST00000530567 RPS6KB1P23443 525 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms