RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 KIAA1683Q9H0B3 1180 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 TCP11L1Q9NUJ3 509 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 TMX2Q9Y320 296 aa16.51■□□□□ 0.23
USF1-209ENST00000529476 C19orf81C9J6K1 198 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 TTLL1O95922 423 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 MCCP23508 829 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 TM4SF4P48230 202 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 ANTXR2P58335 489 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 SREBF2Q12772 1141 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 KIAA1755Q5JYT7 1200 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 USP17L2Q6R6M4 530 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 IQCA1Q86XH1 822 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 LRRC47Q8N1G4 583 aaKnown RBP16.5■□□□□ 0.23
USF1-209ENST00000529476 EMILIN3Q9NT22 766 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 STX8Q9UNK0 236 aa16.5■□□□□ 0.23
USF1-209ENST00000529476 BTBD19C9JJ37 291 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 IGF2BP3O00425 579 aaKnown RBP eCLIP16.49■□□□□ 0.23
USF1-209ENST00000529476 NOVP48745 357 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 USP14P54578 494 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 INHBEP58166 350 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 KRT32Q14532 448 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 RCSD1Q6JBY9 416 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 GPAT2Q6NUI2 795 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 FASTKD5Q7L8L6 764 aaKnown RBP16.49■□□□□ 0.23
USF1-209ENST00000529476 IFNL1Q8IU54 200 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 PROCA1Q8NCQ7 364 aaPredicted RBP16.49■□□□□ 0.23
USF1-209ENST00000529476 MKL1Q969V6 931 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 NEK1Q96PY6 1258 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 ZSCAN10Q96SZ4 725 aaPredicted RBP16.49■□□□□ 0.23
USF1-209ENST00000529476 UBAC1Q9BSL1 405 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 SH2D4AQ9H788 454 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 TMOD4Q9NZQ9 345 aa16.49■□□□□ 0.23
USF1-209ENST00000529476 TNKSO95271 1327 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 RAD21O60216 631 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 HABP4Q5JVS0 413 aaKnown RBP16.48■□□□□ 0.23
USF1-209ENST00000529476 PPP4R3BQ5MIZ7 849 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 TREML2Q5T2D2 321 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 REM2Q8IYK8 340 aaPredicted RBP16.48■□□□□ 0.23
USF1-209ENST00000529476 FAM43AQ8N2R8 423 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 ENAHQ8N8S7 591 aaPredicted RBP16.48■□□□□ 0.23
USF1-209ENST00000529476 C12orf42Q96LP6 360 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 JAKMIP1Q96N16 626 aaKnown RBP16.48■□□□□ 0.23
USF1-209ENST00000529476 VCPKMTQ9H867 229 aa16.48■□□□□ 0.23
USF1-209ENST00000529476 PRC1O43663 620 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 MCM5P33992 734 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 CCDC178Q5BJE1 867 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 ANKRD23Q86SG2 305 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 SPICE1Q8N0Z3 855 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 TTC14Q96N46 770 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 TMEM47Q9BQJ4 181 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 GOPCQ9HD26 462 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 AGTPBP1Q9UPW5 1226 aa16.47■□□□□ 0.23
USF1-209ENST00000529476 F5H6K3 240 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 PDHXO00330 501 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 IFIT3O14879 490 aaKnown RBP16.46■□□□□ 0.23
USF1-209ENST00000529476 TOP1P11387 765 aaKnown RBP16.46■□□□□ 0.23
USF1-209ENST00000529476 CPA1P15085 419 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 VCAM1P19320 739 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 KLRC3Q07444 240 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 SEC23AQ15436 765 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 DGKHQ86XP1 1220 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 ANKS1AQ92625 1134 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 CHMP4CQ96CF2 233 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 TCEANC2Q96MN5 208 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 LRRC2Q9BYS8 371 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 BACH2Q9BYV9 841 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 SENP2Q9HC62 589 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 GPHNQ9NQX3 736 aaPredicted RBP16.46■□□□□ 0.23
USF1-209ENST00000529476 SYNPO2Q9UMS6 1093 aa16.46■□□□□ 0.23
USF1-209ENST00000529476 NDUFB10O96000 172 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 EXOSC10Q01780 885 aaKnown RBP16.45■□□□□ 0.22
USF1-209ENST00000529476 TMEM67Q5HYA8 995 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 OTUD7BQ6GQQ9 843 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 DHX32Q7L7V1 743 aaKnown RBP16.45■□□□□ 0.22
USF1-209ENST00000529476 GMCL1P1Q8NEA9 526 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 IGDCC4Q8TDY8 1250 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 LPAR1Q92633 364 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 MTMR7Q9Y216 660 aa16.45■□□□□ 0.22
USF1-209ENST00000529476 ERICH2A1L162 156 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 HMGB1P09429 215 aaKnown RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 CASTP20810 708 aaKnown RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 PSMA5P28066 241 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 WTAPQ15007 396 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 SART3Q15020 963 aaKnown RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 IFIT1BQ5T764 474 aaKnown RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 SLFN13Q68D06 897 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 BLOC1S2Q6QNY1 142 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 RASGRP2Q7LDG7 609 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 NUP88Q99567 741 aaPredicted RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 RPAP3Q9H6T3 665 aaPredicted RBP16.44■□□□□ 0.22
USF1-209ENST00000529476 KAT14Q9H8E8 782 aa16.44■□□□□ 0.22
USF1-209ENST00000529476 PARP14Q460N5 1801 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 SH2B2O14492 632 aaPredicted RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 WDR46O15213 610 aaKnown RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 HOXA7P31268 230 aaPredicted RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 ANAPC15P60006 121 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 TAF1CQ15572 869 aaPredicted RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 PKN2Q16513 984 aaKnown RBP16.43■□□□□ 0.22
USF1-209ENST00000529476 FAM83BQ5T0W9 1011 aa16.43■□□□□ 0.22
USF1-209ENST00000529476 PNMA1Q8ND90 353 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms