RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	GADL1	Q6ZQY3	521 aa		24.44	■■□□□ 1.5
CD44-222	ENST00000526025	RASEF	Q8IZ41	740 aa		24.44	■■□□□ 1.5
CD44-222	ENST00000526025	GMCL1P1	Q8NEA9	526 aa		24.44	■■□□□ 1.5
CD44-222	ENST00000526025	CLIP2	Q9UDT6	1046 aa		24.44	■■□□□ 1.5
CD44-222	ENST00000526025	WDR19	Q8NEZ3	1342 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	PARP14	Q460N5	1801 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	NMT2	O60551	498 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	HOXA7	P31268	230 aa	Predicted RBP	24.43	■■□□□ 1.5
CD44-222	ENST00000526025	FAM43A	Q8N2R8	423 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	24.43	■■□□□ 1.5
CD44-222	ENST00000526025	UBAC1	Q9BSL1	405 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	STX8	Q9UNK0	236 aa		24.43	■■□□□ 1.5
CD44-222	ENST00000526025	HMGB1	P09429	215 aa	Known RBP	24.42	■■□□□ 1.5
CD44-222	ENST00000526025	TOP1	P11387	765 aa	Known RBP	24.42	■■□□□ 1.5
CD44-222	ENST00000526025	MCM5	P33992	734 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	ATP2B2	Q01814	1243 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	RCSD1	Q6JBY9	416 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	CYB5R4	Q7L1T6	521 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	BEGAIN	Q9BUH8	593 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	SNX14	Q9Y5W7	946 aa		24.42	■■□□□ 1.5
CD44-222	ENST00000526025	PCNT	O95613	3336 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	PDHX	O00330	501 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	WDR46	O15213	610 aa	Known RBP	24.41	■■□□□ 1.5
CD44-222	ENST00000526025	VCAM1	P19320	739 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	SART3	Q15020	963 aa	Known RBP	24.41	■■□□□ 1.5
CD44-222	ENST00000526025	TREML2	Q5T2D2	321 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	IL17RA	Q96F46	866 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	NEK1	Q96PY6	1258 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	RNF186	Q9NXI6	227 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	PNMA3	Q9UL41	463 aa		24.41	■■□□□ 1.5
CD44-222	ENST00000526025	TNKS	O95271	1327 aa		24.4	■■□□□ 1.5
CD44-222	ENST00000526025	RLF	Q13129	1914 aa		24.4	■■□□□ 1.5
CD44-222	ENST00000526025	ANAPC15	P60006	121 aa		24.4	■■□□□ 1.5
CD44-222	ENST00000526025	ZYX	Q15942	572 aa	Known RBP	24.4	■■□□□ 1.5
CD44-222	ENST00000526025	ENAH	Q8N8S7	591 aa	Predicted RBP	24.4	■■□□□ 1.5
CD44-222	ENST00000526025	TMEM47	Q9BQJ4	181 aa		24.4	■■□□□ 1.5
CD44-222	ENST00000526025		F5H6K3	240 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	SEC24B	O95487	1268 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	ANTXR2	P58335	489 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	KLRC3	Q07444	240 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	DGKZ	Q13574	1117 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	SEC23A	Q15436	765 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	TMEM87B	Q96K49	555 aa		24.39	■■□□□ 1.49
CD44-222	ENST00000526025	PARK7	Q99497	189 aa	Known RBP	24.39	■■□□□ 1.49
CD44-222	ENST00000526025	ERICH2	A1L162	156 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L15	C9J2P7	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L13	C9JLJ4	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L11	C9JVI0	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L18	D6R9N7	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L22	D6RA61	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L17	D6RBQ6	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L19	D6RCP7	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L20	D6RJB6	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	NDUFB10	O96000	172 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	OSBP	P22059	807 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	PSMA5	P28066	241 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	USP17L24	Q0WX57	530 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	ADCK5	Q3MIX3	580 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	NOM1	Q5C9Z4	860 aa	Known RBP	24.38	■■□□□ 1.49
CD44-222	ENST00000526025	KIAA1755	Q5JYT7	1200 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	LRRC47	Q8N1G4	583 aa	Known RBP	24.38	■■□□□ 1.49
CD44-222	ENST00000526025	GMCL1	Q96IK5	515 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	ZKSCAN3	Q9BRR0	538 aa		24.38	■■□□□ 1.49
CD44-222	ENST00000526025	TAF1C	Q15572	869 aa	Predicted RBP	24.37	■■□□□ 1.49
CD44-222	ENST00000526025	CATSPERG	Q6ZRH7	1159 aa		24.37	■■□□□ 1.49
CD44-222	ENST00000526025	DHX32	Q7L7V1	743 aa	Known RBP	24.37	■■□□□ 1.49
CD44-222	ENST00000526025	TM6SF1	Q9BZW5	370 aa		24.37	■■□□□ 1.49
CD44-222	ENST00000526025	ZFYVE28	Q9HCC9	887 aa		24.37	■■□□□ 1.49
CD44-222	ENST00000526025	MYPN	Q86TC9	1320 aa		24.36	■■□□□ 1.49
CD44-222	ENST00000526025	IFIT3	O14879	490 aa	Known RBP	24.36	■■□□□ 1.49
CD44-222	ENST00000526025	PRC1	O43663	620 aa		24.36	■■□□□ 1.49
CD44-222	ENST00000526025	IFIT1B	Q5T764	474 aa	Known RBP	24.36	■■□□□ 1.49
CD44-222	ENST00000526025	SLFN13	Q68D06	897 aa		24.36	■■□□□ 1.49
CD44-222	ENST00000526025	IGDCC4	Q8TDY8	1250 aa		24.36	■■□□□ 1.49
CD44-222	ENST00000526025	GTF3C2	Q8WUA4	911 aa	Predicted RBP	24.36	■■□□□ 1.49
CD44-222	ENST00000526025	RPAP3	Q9H6T3	665 aa	Predicted RBP	24.36	■■□□□ 1.49
CD44-222	ENST00000526025	ADGRA2	Q96PE1	1338 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025		A0A0G2JMZ2	1700 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	TRPA1	O75762	1119 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	LIFR	P42702	1097 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	IRX3	P78415	501 aa	Predicted RBP	24.35	■■□□□ 1.49
CD44-222	ENST00000526025	EXOSC10	Q01780	885 aa	Known RBP	24.35	■■□□□ 1.49
CD44-222	ENST00000526025	CRHR2	Q13324	411 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	SPICE1	Q8N0Z3	855 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	TMTC2	Q8N394	836 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	DCAF4	Q8WV16	495 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	JAKMIP1	Q96N16	626 aa	Known RBP	24.35	■■□□□ 1.49
CD44-222	ENST00000526025	ASCC2	Q9H1I8	757 aa	Predicted RBP	24.35	■■□□□ 1.49
CD44-222	ENST00000526025	KAT14	Q9H8E8	782 aa		24.35	■■□□□ 1.49
CD44-222	ENST00000526025	TLR2	O60603	784 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	SNHG28	P0DPA3	235 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	WTAP	Q15007	396 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	TMEM67	Q5HYA8	995 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	LBX2	Q6XYB7	198 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	FBXL16	Q8N461	479 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	PNMA1	Q8ND90	353 aa		24.34	■■□□□ 1.49
CD44-222	ENST00000526025	SH2B2	O14492	632 aa	Predicted RBP	24.33	■■□□□ 1.49
CD44-222	ENST00000526025	PLA2G6	O60733	806 aa		24.33	■■□□□ 1.49
CD44-222	ENST00000526025	GCLC	P48506	637 aa	Predicted RBP	24.33	■■□□□ 1.49
CD44-222	ENST00000526025	BLOC1S2	Q6QNY1	142 aa		24.33	■■□□□ 1.49

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