RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CDC45O75419 566 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 NFICP08651 508 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 RAB6AP20340 208 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 ZC3H12BQ5HYM0 836 aaKnown RBP6.67□□□□□ -1.34
CD44-220ENST00000525688 NBPF12Q5TAG4 269 aaPredicted RBP6.67□□□□□ -1.34
CD44-220ENST00000525688 LETMD1Q6P1Q0 360 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 MYRFLQ96LU7 910 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 SPATA9Q9BWV2 254 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 TMX1Q9H3N1 280 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 PFDN2Q9UHV9 154 aa6.67□□□□□ -1.34
CD44-220ENST00000525688 CBFA2T2O43439 604 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 SLITRK5O94991 958 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 RNF4P78317 190 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 INSM1Q01101 510 aaPredicted RBP6.66□□□□□ -1.34
CD44-220ENST00000525688 SGO2Q562F6 1265 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 AXDND1Q5T1B0 1012 aaPredicted RBP6.66□□□□□ -1.34
CD44-220ENST00000525688 C16orf86Q6ZW13 317 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 KIAA0907Q7Z7F0 614 aaPredicted RBP6.66□□□□□ -1.34
CD44-220ENST00000525688 TXNRD3Q86VQ6 643 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 ARMC10Q8N2F6 343 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 SYNPOQ8N3V7 929 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 ZBTB38Q8NAP3 1195 aaPredicted RBP6.66□□□□□ -1.34
CD44-220ENST00000525688 XAGE3Q8WTP9 111 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 FBLIM1Q8WUP2 373 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 FBXL18Q96ME1 805 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 KREMEN1Q96MU8 473 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 APBA2Q99767 749 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 HAUS7Q99871 368 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 KLHL25Q9H0H3 589 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 LEMD3Q9Y2U8 911 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 DAGLAQ9Y4D2 1042 aa6.66□□□□□ -1.34
CD44-220ENST00000525688 DYNC1LI2O43237 492 aaPredicted RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 ADCY3O60266 1144 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 TP53P04637 393 aaPredicted RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 EPHX1P07099 455 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 BMP3P12645 472 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 MAP4P27816 1152 aaKnown RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 TDRD10Q5VZ19 366 aaKnown RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 HEATR6Q6AI08 1181 aaKnown RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 FAM20CQ8IXL6 584 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 ZNF513Q8N8E2 541 aaPredicted RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 ZSWIM2Q8NEG5 633 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 RIN3Q8TB24 985 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 RNF141Q8WVD5 230 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 UTP4Q969X6 686 aaKnown RBP6.65□□□□□ -1.34
CD44-220ENST00000525688 MIPEPQ99797 713 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 ASPNQ9BXN1 380 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 PRDM10Q9NQV6 1147 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 C1GALT1Q9NS00 363 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 PTCH2Q9Y6C5 1203 aa6.65□□□□□ -1.34
CD44-220ENST00000525688 CCDC163A0A0D9SF12 145 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 AGRPO00253 132 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 ETV3P41162 512 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 TMEM67Q5HYA8 995 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 CDH24Q86UP0 819 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 CCDC144CPQ8IYA2 1237 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 C7orf61Q8IZ16 206 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 FAM9AQ8IZU1 332 aaPredicted RBP6.64□□□□□ -1.35
CD44-220ENST00000525688 MEGF10Q96KG7 1140 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 SLC26A8Q96RN1 970 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 SSBP4Q9BWG4 385 aaPredicted RBP6.64□□□□□ -1.35
CD44-220ENST00000525688 PRKAB1Q9Y478 270 aa6.64□□□□□ -1.35
CD44-220ENST00000525688 A0A087WZG4 1122 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 FAM95CA0A1B0GW59 222 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 A0A1W2PQU0 124 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 SHOXO15266 292 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 CAPNS1P04632 268 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 FAM153BP0C7A2 387 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 AUHQ13825 339 aaKnown RBP6.63□□□□□ -1.35
CD44-220ENST00000525688 SV2CQ496J9 727 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 DCAF15Q66K64 600 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 COX4I2Q96KJ9 171 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 FEZ1Q99689 392 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 MKRN2Q9H000 416 aaKnown RBP6.63□□□□□ -1.35
CD44-220ENST00000525688 CWC22Q9HCG8 908 aaKnown RBP6.63□□□□□ -1.35
CD44-220ENST00000525688 PRR13Q9NZ81 148 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 WHRNQ9P202 907 aa6.63□□□□□ -1.35
CD44-220ENST00000525688 EOMESO95936 686 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 CD247P20963 164 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 TCEA2Q15560 299 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 NBPF9Q3BBW0 867 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 RNF187Q5TA31 235 aaPredicted RBP6.62□□□□□ -1.35
CD44-220ENST00000525688 CLEC10AQ8IUN9 316 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 RCC1LQ96I51 464 aaKnown RBP6.62□□□□□ -1.35
CD44-220ENST00000525688 ZNF512BQ96KM6 892 aaPredicted RBP6.62□□□□□ -1.35
CD44-220ENST00000525688 FAM83CQ9BQN1 747 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 DUSP23Q9BVJ7 150 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 BRINP2Q9C0B6 783 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 GBP3Q9H0R5 595 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 SLKQ9H2G2 1235 aaPredicted RBP6.62□□□□□ -1.35
CD44-220ENST00000525688 FAM86C1Q9NVL1 165 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 ZNF451Q9Y4E5 1061 aa6.62□□□□□ -1.35
CD44-220ENST00000525688 DHX15O43143 795 aaKnown RBP6.61□□□□□ -1.35
CD44-220ENST00000525688 PPM1BO75688 479 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 CYP7A1P22680 504 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 RXRBP28702 533 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 PAOXQ6QHF9 649 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 FAM214BQ7L5A3 538 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 GIMAP7Q8NHV1 300 aa6.61□□□□□ -1.35
CD44-220ENST00000525688 LGR6Q9HBX8 967 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms