RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 WDR24Q96S15 920 aa12.6□□□□□ -0.39
HDAC9-228ENST00000524023 CARD6Q9BX69 1037 aa12.6□□□□□ -0.39
HDAC9-228ENST00000524023 ROBO1Q9Y6N7 1651 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 EFCAB8A8MWE9 144 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 PPP1R3GB7ZBB8 358 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 AKR1B15C9JRZ8 316 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 ORC4O43929 436 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 CASQ1P31415 396 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 ATP2C1P98194 919 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 EVX2Q03828 476 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 PTGDRQ13258 359 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 BMS1Q14692 1282 aaKnown RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 CDKAL1Q5VV42 579 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 CELF1Q92879 486 aaKnown RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 PANX2Q96RD6 677 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 NRAPQ86VF7 1730 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 LAMB1P07942 1786 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 SEMA3EO15041 775 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 NMT2O60551 498 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 PBX1P40424 430 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 MAP3K9P80192 1104 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 CTCFLQ8NI51 663 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 DESI2Q9BSY9 194 aa12.59□□□□□ -0.39
HDAC9-228ENST00000524023 ADD3Q9UEY8 706 aaKnown RBP12.59□□□□□ -0.39
HDAC9-228ENST00000524023 MECOMQ03112 1051 aa12.58□□□□□ -0.4
HDAC9-228ENST00000524023 SMYD4Q8IYR2 804 aaPredicted RBP12.58□□□□□ -0.4
HDAC9-228ENST00000524023 IGSF22Q8N9C0 903 aa12.58□□□□□ -0.4
HDAC9-228ENST00000524023 SMARCC1Q92922 1105 aaPredicted RBP12.58□□□□□ -0.4
HDAC9-228ENST00000524023 KIFC2Q96AC6 838 aa12.58□□□□□ -0.4
HDAC9-228ENST00000524023 CTAGE1Q96RT6 745 aa12.58□□□□□ -0.4
HDAC9-228ENST00000524023 DCP1AQ9NPI6 582 aaPredicted RBP12.58□□□□□ -0.4
HDAC9-228ENST00000524023 FHOD1Q9Y613 1164 aa12.58□□□□□ -0.4
HDAC9-228ENST00000524023 AHDC1Q5TGY3 1603 aaPredicted RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 SCG2P13521 617 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 KLRK1P26718 216 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 TRAPPC10P48553 1259 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 RBL2Q08999 1139 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 MTF1Q14872 753 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 E2F4Q16254 413 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 FAM47AQ5JRC9 791 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 PPFIBP1Q86W92 1011 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 CRNKL1Q9BZJ0 848 aaKnown RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 ARGLU1Q9NWB6 273 aaPredicted RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 MRFAP1Q9Y605 127 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 XDHP47989 1333 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 SOWAHDA6NJG2 315 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 ADAMTS2O95450 1211 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 TPM1P09493 284 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 NLRP5P59047 1200 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 PFKFB3Q16875 520 aaPredicted RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 SLC10A5Q5PT55 438 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 PIK3AP1Q6ZUJ8 805 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 IQUBQ8NA54 791 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 STAMQ92783 540 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 NAA15Q9BXJ9 866 aaKnown RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 MRPL44Q9H9J2 332 aaKnown RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 ATP8A2Q9NTI2 1148 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 PDS5AQ29RF7 1337 aaKnown RBP12.57□□□□□ -0.4
HDAC9-228ENST00000524023 KIAA1551Q9HCM1 1747 aa12.57□□□□□ -0.4
HDAC9-228ENST00000524023 KCNQ2O43526 872 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 ZRANB2O95218 330 aaKnown RBP eCLIP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 CCDC175P0C221 793 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 VEGFAP15692 232 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 KARSQ15046 597 aaKnown RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 TERF2Q15554 542 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 FILIP1LQ4L180 1135 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 PDXDC2PQ6P474 469 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 LINC00116Q8NCU8 138 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 CPLX3Q8WVH0 158 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 CTNND2Q9UQB3 1225 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 CCDC88AQ3V6T2 1871 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 ADAMTS3O15072 1205 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 PNMA6AP0CW24 399 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 CYP2D6P10635 497 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 GTF2E1P29083 439 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 IL17AQ16552 155 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 SBK1Q52WX2 424 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 RAD9BQ6WBX8 426 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 BICDL1Q6ZP65 573 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 ZNF771Q7L3S4 317 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 PYM1Q9BRP8 204 aaKnown RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 BLZF1Q9H2G9 400 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 ARPP21Q9UBL0 812 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-228ENST00000524023 ADGRG1Q9Y653 693 aa12.56□□□□□ -0.4
HDAC9-228ENST00000524023 MFAP3LO75121 409 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 PRDX5P30044 214 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 HIBADHP31937 336 aaKnown RBP12.55□□□□□ -0.4
HDAC9-228ENST00000524023 MCM7P33993 719 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 RPS8P62241 208 aaKnown RBP12.55□□□□□ -0.4
HDAC9-228ENST00000524023 PPP2R3AQ06190 1150 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 RCSD1Q6JBY9 416 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 TMCO3Q6UWJ1 677 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 MTRQ99707 1265 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 TFCP2L1Q9NZI6 479 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 MYH8P13535 1937 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 MAST2Q6P0Q8 1798 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 ZNF831Q5JPB2 1677 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 SPATA31A5Q5VU36 1347 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 ITIH6Q6UXX5 1313 aa12.55□□□□□ -0.4
HDAC9-228ENST00000524023 SPATA31A7Q8IWB4 1347 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms