RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CARS2Q9HA77 564 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 METTL14Q9HCE5 456 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 LUC7LQ9NQ29 371 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 KCNK4Q9NYG8 393 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZSWIM5Q9P217 1185 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 BCCIPQ9P287 314 aaKnown RBP eCLIP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAGEC2Q9UBF1 373 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TNFRSF10DQ9UBN6 386 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPP1R1BQ9UD71 204 aaPredicted RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 GPR160Q9UJ42 338 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTF2Q9UNY4 1162 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SMG5Q9UPR3 1016 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 CTNND2Q9UQB3 1225 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 USP20Q9Y2K6 914 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMA7Q9Y2S6 64 aaKnown RBP0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 KCTD3Q9Y597 815 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLC12A7Q9Y666 1083 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 PITPNM2Q9BZ72 1349 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 ROBO2Q9HCK4 1378 aa0.81□□□□□ -2.28
RNU4-54P-201ENST00000516428 LOC102724159A0A0B4J2E5 919 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 A0A1W2PQ45 241 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 A0A1W2PQY0 241 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 H3BS24 57 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NFKBIEO00221 500 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ETV2O00321 342 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TNFRSF10BO14763 440 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 SCAMP3O14828 347 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 N4BP3O15049 544 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 MARCH6O60337 910 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 FOXD2O60548 495 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 FZD7O75084 574 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 DKK1O94907 266 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZBTB7AO95365 584 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 MED26O95402 600 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CBX7O95931 251 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CST3P01034 146 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 HPXP02790 462 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYP2E1P05181 493 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 INHBBP09529 407 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 C1QTNF9P0C862 333 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NCAM1P13591 858 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RAG1P15918 1043 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PNLIPP16233 465 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 LIG1P18858 919 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLCG1P19174 1290 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ATP2B1P20020 1258 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RPL10P27635 214 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CFPP27918 469 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ERCC5P28715 1186 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAPK8P45983 427 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF165P49910 485 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 HK2P52789 917 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CORO7P57737 925 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TGFB2P61812 414 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 IGBP1P78318 339 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 DLG4P78352 724 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 SRSF3P84103 164 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYP4F8P98187 520 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 POU4F1Q01851 419 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 HHEXQ03014 270 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RBL2Q08999 1139 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 BNIP3Q12983 259 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 GNL2Q13823 731 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PWP2Q15269 919 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CWF19L2Q2TBE0 894 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 EAPPQ56P03 285 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H12AQ5D1E8 599 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TAF7LQ5H9L4 462 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOL9Q5SY16 702 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADGRF1Q5T601 910 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 GORABQ5T7V8 394 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 COL13A1Q5TAT6 717 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZBTB37Q5TC79 503 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 EGFLAMQ63HQ2 1017 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTBK2Q6IQ55 1244 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PHLDB3Q6NSJ2 640 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CNKSR3Q6P9H4 555 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 GIMAP6Q6P9H5 292 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 POMZP3Q6PJE2 187 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H14Q6PJT7 736 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 EP400NLQ6ZTU2 488 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTLL10Q6ZVT0 673 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 FBXO33Q7Z6M2 555 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF605Q86T29 641 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TSPYL5Q86VY4 417 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ATCAYQ86WG3 371 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TICAM2Q86XR7 235 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 DHX37Q8IY37 1157 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 IFNL2Q8IZJ0 200 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 LGI4Q8N135 537 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTC9BQ8N6N2 239 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM13CQ8NE31 585 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZCRB1Q8TBF4 217 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 USP33Q8TEY7 942 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 STK32AQ8WU08 396 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYB5D2Q8WUJ1 264 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RNF141Q8WVD5 230 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NELL1Q92832 810 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ISL2Q96A47 359 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 INTS4Q96HW7 963 aaKnown RBP0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms