RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 PDE4DIPQ5VU43 2346 aa16.36■□□□□ 0.21
TCOF1-215ENST00000515516 SPDYE16A6NNV3 312 aaPredicted RBP16.35■□□□□ 0.21
TCOF1-215ENST00000515516 GSG1L2A8MUP6 293 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 GPAA1O43292 621 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 CNMDO75829 334 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 MX1P20591 662 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 TRIB2Q92519 343 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 VCPKMTQ9H867 229 aa16.35■□□□□ 0.21
TCOF1-215ENST00000515516 SLC15A5A6NIM6 579 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 PATL2C9JE40 543 aaKnown RBP16.34■□□□□ 0.21
TCOF1-215ENST00000515516 RAD21O60216 631 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 FLOT1O75955 427 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 SLC34A2O95436 690 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 EEF2P13639 858 aaKnown RBP16.34■□□□□ 0.21
TCOF1-215ENST00000515516 MAP2K5Q13163 448 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 AAMPQ13685 434 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 MORN1Q5T089 497 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 POTEEQ6S8J3 1075 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 SAMD1Q6SPF0 538 aaPredicted RBP16.34■□□□□ 0.21
TCOF1-215ENST00000515516 SPICE1Q8N0Z3 855 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 STK11IPQ8N1F8 1099 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 MB21D1Q8N884 522 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 PI4K2BQ8TCG2 481 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 APBA2Q99767 749 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 GOPCQ9HD26 462 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 BTBD7Q9P203 1132 aa16.34■□□□□ 0.21
TCOF1-215ENST00000515516 NAV1Q8NEY1 1877 aa16.33■□□□□ 0.21
TCOF1-215ENST00000515516 SMIM22K7EJ46 135 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 M0R2C6 588 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 WDR46O15213 610 aaKnown RBP16.33■□□□□ 0.2
TCOF1-215ENST00000515516 PRKAR2AP13861 404 aaKnown RBP16.33■□□□□ 0.2
TCOF1-215ENST00000515516 PTPREP23469 700 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 TRIM32Q13049 653 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 HDAC1Q13547 482 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-215ENST00000515516 UBE2Q1Q7Z7E8 422 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 CLEC10AQ8IUN9 316 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 SIAH1Q8IUQ4 282 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 ZNF444Q8N0Y2 327 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-215ENST00000515516 OTUD7AQ8TE49 926 aaPredicted RBP16.33■□□□□ 0.2
TCOF1-215ENST00000515516 USP6NLQ92738 828 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 CRISPLD2Q9H0B8 497 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 NR2E3Q9Y5X4 410 aa16.33■□□□□ 0.2
TCOF1-215ENST00000515516 H0YGN5 161 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 MGAMO43451 1857 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 SLC3A2P08195 630 aaKnown RBP16.32■□□□□ 0.2
TCOF1-215ENST00000515516 DSG3P32926 999 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 PLS1Q14651 629 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 DDX60LQ5H9U9 1706 aaKnown RBP16.32■□□□□ 0.2
TCOF1-215ENST00000515516 MFSD14CQ5VZR4 134 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 NECAB2Q7Z6G3 386 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 ANKLE1Q8NAG6 615 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 CENPFP49454 3210 aa16.32■□□□□ 0.2
TCOF1-215ENST00000515516 STRNO43815 780 aa16.31■□□□□ 0.2
TCOF1-215ENST00000515516 KIAA1755Q5JYT7 1200 aa16.31■□□□□ 0.2
TCOF1-215ENST00000515516 DPP9Q86TI2 863 aa16.31■□□□□ 0.2
TCOF1-215ENST00000515516 IFNL3Q8IZI9 196 aa16.31■□□□□ 0.2
TCOF1-215ENST00000515516 SPATC1LQ9H0A9 340 aa16.31■□□□□ 0.2
TCOF1-215ENST00000515516 RWDD1Q9H446 243 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-215ENST00000515516 EVI5O60447 810 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 RASA1P20936 1047 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 PDE4BQ07343 736 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 CACNB2Q08289 660 aaPredicted RBP16.3■□□□□ 0.2
TCOF1-215ENST00000515516 GRB14Q14449 540 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 CCL14Q16627 93 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 MAP3K21Q5TCX8 1036 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 SHCBP1Q8NEM2 672 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 EVI5LQ96CN4 794 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 PAWRQ96IZ0 340 aaKnown RBP16.3■□□□□ 0.2
TCOF1-215ENST00000515516 MOV10L1Q9BXT6 1211 aaKnown RBP16.3■□□□□ 0.2
TCOF1-215ENST00000515516 NAPBQ9H115 298 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 SLC5A4Q9NY91 659 aa16.3■□□□□ 0.2
TCOF1-215ENST00000515516 ERCC3P19447 782 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 HABP4Q5JVS0 413 aaKnown RBP16.29■□□□□ 0.2
TCOF1-215ENST00000515516 ZMYM1Q5SVZ6 1142 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 NCAPG2Q86XI2 1143 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 ATG4CQ96DT6 458 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 SEC62Q99442 399 aaKnown RBP16.29■□□□□ 0.2
TCOF1-215ENST00000515516 NBPF3Q9H094 633 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 MROH8Q9H579 483 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 EPB41L4AQ9HCS5 686 aaPredicted RBP16.29■□□□□ 0.2
TCOF1-215ENST00000515516 NYAP2Q9P242 653 aa16.29■□□□□ 0.2
TCOF1-215ENST00000515516 SLC25A27O95847 323 aa16.28■□□□□ 0.2
TCOF1-215ENST00000515516 HOXC6P09630 235 aa16.28■□□□□ 0.2
TCOF1-215ENST00000515516 CLIP2Q9UDT6 1046 aa16.28■□□□□ 0.2
TCOF1-215ENST00000515516 STAP2Q9UGK3 403 aa16.28■□□□□ 0.2
TCOF1-215ENST00000515516 OGDHLQ9ULD0 1010 aa16.28■□□□□ 0.2
TCOF1-215ENST00000515516 ROBO3Q96MS0 1386 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 PRDM1O75626 825 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 TSPY3P0CV98 308 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 TSPY8P0CW00 308 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 ADORA2AP29274 412 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 CNGA1P29973 690 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 CCND3P30281 292 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-215ENST00000515516 PDE1AP54750 535 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 FAM83BQ5T0W9 1011 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.27■□□□□ 0.2
TCOF1-215ENST00000515516 C11orf49Q9H6J7 331 aa16.27■□□□□ 0.2
TCOF1-215ENST00000515516 COLQQ9Y215 455 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-215ENST00000515516 CTDP1Q9Y5B0 961 aaPredicted RBP16.27■□□□□ 0.2
TCOF1-215ENST00000515516 SALL3Q9BXA9 1300 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms