RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MAGEA1P43355 309 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 RABEP2Q9H5N1 569 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 CTDNEP1O95476 244 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 RPN1P04843 607 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 PARP1P09874 1014 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 HIBADHP31937 336 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 CYB5R4Q7L1T6 521 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 GPATCH11Q8N954 259 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 ACRBPQ8NEB7 543 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 GOLGA5Q8TBA6 731 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 ARID4AP29374 1257 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 TXKP42681 527 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 FOXO4P98177 505 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 ST3GAL1Q11201 340 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 DDB1Q16531 1140 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 ATG9AQ7Z3C6 839 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 CABP7Q86V35 215 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 PANX2Q96RD6 677 aa9.41□□□□□ -0.9
LIMCH1-216ENST00000512820 SCG2P13521 617 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 ERCC3P19447 782 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 PTPREP23469 700 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 DNM2P50570 870 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 SHC4Q6S5L8 630 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 RGS22Q8NE09 1264 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 EPSTI1Q96J88 318 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 ANKRD2Q9GZV1 360 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 ASAP1Q9ULH1 1129 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 ATP2C2O75185 946 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 TNNC1P63316 161 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 TFAP4Q01664 338 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 TYW1BQ6NUM6 668 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 RBM43Q6ZSC3 357 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 BLIDQ8IZY5 108 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 DPF2Q92785 391 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 STRBPQ96SI9 672 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 CEP170BQ9Y4F5 1589 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 MAP2P11137 1827 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 VGLL3A8MV65 326 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 TBCAO75347 108 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 CDC27P30260 824 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 GYG1P46976 350 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 HNRNPH2P55795 449 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 MAP2K1Q02750 393 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 MEX3CQ5U5Q3 659 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 ENGASEQ8NFI3 743 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 FAM71BQ8TC56 605 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 NOX5Q96PH1 765 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 IFIH1Q9BYX4 1025 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 INCENPQ9NQS7 918 aa9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 FAM207AQ9NSI2 230 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-216ENST00000512820 PALLDQ8WX93 1383 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 UTYO14607 1347 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 KAT6BQ8WYB5 2073 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 ENC1O14682 589 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 RNASE9P60153 205 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 RAPGEF1Q13905 1077 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 NONOQ15233 471 aaKnown RBP eCLIP9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 LCORLQ8N3X6 602 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 ERMNQ8TAM6 284 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 CUL5Q93034 780 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 KAZALD1Q96I82 304 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 EPC1Q9H2F5 836 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 TFCP2L1Q9NZI6 479 aa9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 SAP30BPQ9UHR5 308 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-216ENST00000512820 NDUFAB1O14561 156 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 C2CD5Q86YS7 1000 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 EEF2KMTQ96G04 330 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 PAGE5Q96GU1 130 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 MED4Q9NPJ6 270 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 MYO1AQ9UBC5 1043 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 WDR19Q8NEZ3 1342 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 FDPSP14324 419 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 CC2D1AQ6P1N0 951 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 NYAP1Q6ZVC0 841 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 DYMQ7RTS9 669 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 NLRP10Q86W26 655 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 ARFGAP2Q8N6H7 521 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 GCOM1H8Y6P7 765 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 MYZAPP0CAP1 466 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 PICALMQ13492 652 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 KIAA0753Q2KHM9 967 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 KRT25Q7Z3Z0 450 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 LMBR1Q8WVP7 490 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 LRWD1Q9UFC0 647 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 FAN1Q9Y2M0 1017 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 TSPOAP1O95153 1857 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 A0A0G2JLW4 131 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 GOLGA6L10A0A0M3HER8 536 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 RFX5P48382 616 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 TPTE2Q6XPS3 522 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 RRAGAQ7L523 313 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC84Q86UT8 332 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 IFT20Q8IY31 132 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 TTLL11Q8NHH1 800 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 IPO4Q8TEX9 1081 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 PPM1EQ8WY54 764 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 NYXQ9GZU5 481 aa9.39□□□□□ -0.91
LIMCH1-216ENST00000512820 NEDD4P46934 1319 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 FOXN1O15353 648 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms