RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ANO1Q5XXA6 986 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 AACSQ86V21 672 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 SPICE1Q8N0Z3 855 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 RPGRIP1Q96KN7 1286 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 CHP1Q99653 195 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 LLPHQ9BRT6 129 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 MAF1Q9H063 256 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC8Q9H0W5 538 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 SLC5A4Q9NY91 659 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 GGA2Q9UJY4 613 aa13.43□□□□□ -0.26
LIMCH1-213ENST00000511496 SBNO1A3KN83 1393 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 PDHA1P08559 390 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 ZNF18P17022 549 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 CCT6AP40227 531 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 EPHB4P54760 987 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 TMEM62Q0P6H9 643 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 ACBD5Q5T8D3 534 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 RAB11FIP4Q86YS3 637 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 CNGA4Q8IV77 575 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 GALNT15Q8N3T1 639 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 ALDH8A1Q9H2A2 487 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 PHF20L1A8MW92 1017 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 NUGGCQ68CJ6 796 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 PRCCQ92733 491 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 BICD1Q96G01 975 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 A6NHS1 94 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 GOLGA6L10A6NI86 522 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 M0R2C6 588 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 N4BP3O15049 544 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 COBLO75128 1261 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 IDEP14735 1019 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 KRT32Q14532 448 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 FAM133BQ5BKY9 247 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 MTHFD1LQ6UB35 978 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 RBM12BQ8IXT5 1001 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 SMARCAL1Q9NZC9 954 aa13.42□□□□□ -0.26
LIMCH1-213ENST00000511496 TUBGCP6Q96RT7 1819 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 SYCP2Q9BX26 1530 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 KDRP35968 1356 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 RASSF10A6NK89 507 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 GYPCP04921 128 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 SLMAPQ14BN4 828 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 RRS1Q15050 365 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 DNAAF2Q9NVR5 837 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 AATFQ9NY61 560 aaKnown RBP eCLIP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 HMG20BQ9P0W2 317 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 EPN1Q9Y6I3 576 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 ABCA6Q8N139 1617 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 GKAP1Q5VSY0 366 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 CYP26C1Q6V0L0 522 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 EDC3Q96F86 508 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 PHACTR1Q9C0D0 580 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 TSPYL2Q9H2G4 693 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 POLR3EQ9NVU0 708 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 A0A1B0GTH6 734 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 ESYT3A0FGR9 886 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 STXBP3O00186 592 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 DNAJC8O75937 253 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 KRT9P35527 623 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 IQCEQ6IPM2 695 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 SHC4Q6S5L8 630 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 CRELD2Q6UXH1 353 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC129Q6ZRS4 1044 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 DYDC1Q8WWB3 177 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 UBE2OQ9C0C9 1292 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 MAN1B1Q9UKM7 699 aa13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 PA2G4Q9UQ80 394 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-213ENST00000511496 URB2Q14146 1524 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 MACROD2A1Z1Q3 448 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 H7C1W4 665 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 RNF225M0QZC1 329 aaPredicted RBP13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 TEFQ10587 303 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 SULT6B1Q6IMI4 303 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ERICH1Q86X53 443 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 GRAMD1CQ8IYS0 662 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ATP6V1G3Q96LB4 118 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 C14orf93Q9H972 538 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 CABP1Q9NZU7 370 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC178Q5BJE1 867 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ANKRD20A2Q5SQ80 823 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 AKNAD1Q5T1N1 836 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ANKRD20A1Q5TYW2 823 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ANKRD20A3Q5VUR7 823 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 CCDC170Q8IYT3 715 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ENOX1Q8TC92 643 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 L3MBTL3Q96JM7 780 aaPredicted RBP13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 NLRP3Q96P20 1036 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 ARHGEF10LQ9HCE6 1279 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 NFU1Q9UMS0 254 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 STK38LQ9Y2H1 464 aa13.4□□□□□ -0.26
LIMCH1-213ENST00000511496 HIP1O00291 1037 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 PSMD14O00487 310 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 FAM153BP0C7A2 387 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 PCK1P35558 622 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 FBLN2P98095 1184 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 FAM153CQ494X1 144 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 EMBQ6PCB8 327 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CCHCR1Q8TD31 782 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CCT6BQ92526 530 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 FAM153AQ9UHL3 310 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms