RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TMEM67Q5HYA8 995 aa19.27■□□□□ 0.68
SQSTM1-211ENST00000506690 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-211ENST00000506690 TTC5Q8N0Z6 440 aa19.27■□□□□ 0.68
SQSTM1-211ENST00000506690 LRP6O75581 1613 aa19.27■□□□□ 0.67
SQSTM1-211ENST00000506690 PHKG2P15735 406 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 HNRNPH1P31943 449 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 ZC3H6P61129 1189 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 NR5A1Q13285 461 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 PI16Q6UXB8 463 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 CADPS2Q86UW7 1296 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 GDAP1L1Q96MZ0 367 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 SLC12A7Q9Y666 1083 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 GRIN2DO15399 1336 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 NUP188Q5SRE5 1749 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 PKD1L3Q7Z443 1732 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 COPB1P53618 953 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 CKAP4Q07065 602 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 KCNV1Q6PIU1 500 aa19.26■□□□□ 0.67
SQSTM1-211ENST00000506690 SRGAP2O75044 1071 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 ADD2P35612 726 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 GPATCH11Q8N954 259 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 EPSTI1Q96J88 318 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 CTNND2Q9UQB3 1225 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 GOLGA6BA6NDN3 693 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 EIF3HO15372 352 aaKnown RBP eCLIP19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 ZMYND10O75800 440 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 GBP6Q6ZN66 633 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 ZNF662Q6ZS27 426 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 GSPT2Q8IYD1 628 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 CAPS2Q9BXY5 557 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 VPS16Q9H269 839 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 GLI3P10071 1580 aa19.25■□□□□ 0.67
SQSTM1-211ENST00000506690 TRPM3Q9HCF6 1732 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 SPAG1Q07617 926 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 POTEDQ86YR6 584 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 BCAS4Q8TDM0 211 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 AENQ8WTP8 325 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 AKAP11Q9UKA4 1901 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 HERVK_113P62684 666 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 SH3GL2Q99962 352 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 FBXO3Q9UK99 471 aa19.24■□□□□ 0.67
SQSTM1-211ENST00000506690 TRIM22Q8IYM9 498 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 OXER1Q8TDS5 423 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 JAKMIP2Q96AA8 810 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 EHD4Q9H223 541 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 FAM184BQ9ULE4 1060 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 USP8P40818 1118 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 TCP11X2Q5H9J9 407 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 FBXW10Q5XX13 1052 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 CNPY4Q8N129 248 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 CAPZA3Q96KX2 299 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 CABP5Q9NP86 173 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 TAB2Q9NYJ8 693 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 ZSWIM5Q9P217 1185 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 RWDD2AQ9UIY3 292 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 RGPD5Q99666 1765 aa19.23■□□□□ 0.67
SQSTM1-211ENST00000506690 SHTN1A0MZ66 631 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 NBPF26B4DH59 902 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 DEXIO95424 95 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 APPP05067 770 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 PSEN1P49768 467 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 TTF1Q15361 905 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 CCDC122Q5T0U0 273 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 NBPF10Q6P3W6 841 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 NBPF15Q8N660 670 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 SYMPKQ92797 1274 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 DNAJC7Q99615 494 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 ATXN2Q99700 1313 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 IFIT3O14879 490 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 INPP5BP32019 993 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 EHBP1Q8NDI1 1231 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 OR8K1Q8NGG5 319 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 CXorf56Q9H5V9 222 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 INCENPQ9NQS7 918 aa19.22■□□□□ 0.67
SQSTM1-211ENST00000506690 KCNJ18B7U540 433 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 GOLGA8KD6RF30 607 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 PDE2AO00408 941 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 COBLO75128 1261 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 MCAMP43121 646 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 MNAT1P51948 309 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 KCNJ12Q14500 433 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 TTLL7Q6ZT98 887 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 PRPF38AQ8NAV1 312 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 RAPGEF4Q8WZA2 1011 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 CHD4Q14839 1912 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 TTC26A0AVF1 554 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 SF3B2Q13435 895 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 UBE3CQ15386 1083 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 CRACR2BQ8N4Y2 399 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 ANKRD20A12PQ8NF67 263 aa19.21■□□□□ 0.67
SQSTM1-211ENST00000506690 TRIM75PA6NK02 468 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 GNGT1P63211 74 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 RTN1Q16799 776 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 CCDC57Q2TAC2 916 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 WDR59Q6PJI9 974 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 AMOTL1Q8IY63 956 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 TFR2Q9UP52 801 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 ANO9A1A5B4 782 aa19.2■□□□□ 0.66
SQSTM1-211ENST00000506690 MAP2K2P36507 400 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms