RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS41-214ENST00000490924 GTF3C6Q969F1 213 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 MRFAP1L1Q96HT8 127 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 HSH2DQ96JZ2 352 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SLC26A8Q96RN1 970 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 ALG2Q9H553 416 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 ATG3Q9NT62 314 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 HCN2Q9UL51 889 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SLC6A14Q9UN76 642 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SPEF2Q9C093 1822 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 LTN1O94822 1766 aa6.84□□□□□ -1.31
VPS41-214ENST00000490924 SRCAPQ6ZRS2 3230 aa6.84□□□□□ -1.32
VPS41-214ENST00000490924 PALLDQ8WX93 1383 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 WDR19Q8NEZ3 1342 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 M0R2N6 131 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 HCLS1P14317 486 aaPredicted RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 KCNA6P17658 529 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 RBM6P78332 1123 aaKnown RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 DNM1Q05193 864 aaKnown RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 TYRO3Q06418 890 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 MCM6Q14566 821 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 NBPF6Q5VWK0 638 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 PSAPL1Q6NUJ1 521 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 PRPF40BQ6NWY9 871 aaKnown RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 PLA2G4DQ86XP0 818 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 ANKRD7Q92527 254 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 NBPF4Q96M43 638 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 MDFIQ99750 246 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 DSCC1Q9BVC3 393 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 GTPBP4Q9BZE4 634 aaKnown RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 TSPAN10Q9H1Z9 355 aaPredicted RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 MAP3K2Q9Y2U5 619 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.83□□□□□ -1.32
VPS41-214ENST00000490924 DCCP43146 1447 aa6.83□□□□□ -1.32
VPS41-214ENST00000490924 FER1L4A9Z1Z3 1794 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 GOLGA6L4A6NEF3 574 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 SMTNL1A8MU46 457 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 FIBPO43427 364 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 PFKFB2O60825 505 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 TAF5LO75529 589 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 SASH1O94885 1247 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 KIF20AO95235 890 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 EPHA4P54764 986 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 GSDMDP57764 484 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 PTH1RQ03431 593 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 ST3GAL1Q11201 340 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 CCINQ13939 588 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 C20orf204Q6ZNR8 217 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 BTLAQ7Z6A9 289 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 TTC6Q86TZ1 520 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 AACSQ86V21 672 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 CCDC83Q8IWF9 413 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 DMRTC2Q8IXT2 367 aaPredicted RBP6.82□□□□□ -1.32
VPS41-214ENST00000490924 ALDH16A1Q8IZ83 802 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 DTWD1Q8N5C7 304 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 LEO1Q8WVC0 666 aaPredicted RBP6.82□□□□□ -1.32
VPS41-214ENST00000490924 EAF2Q96CJ1 260 aaPredicted RBP6.82□□□□□ -1.32
VPS41-214ENST00000490924 KAZALD1Q96I82 304 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 NGLY1Q96IV0 654 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 SPATA32Q96LK8 384 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 BPIFA3Q9BQP9 254 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 METTL22Q9BUU2 404 aaPredicted RBP6.82□□□□□ -1.32
VPS41-214ENST00000490924 ZMYND15Q9H091 742 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 TNMDQ9H2S6 317 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 HELLSQ9NRZ9 838 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 DNAJB12Q9NXW2 375 aaKnown RBP6.82□□□□□ -1.32
VPS41-214ENST00000490924 FAM13BQ9NYF5 915 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 RCOR1Q9UKL0 485 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 TPCN1Q9ULQ1 816 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 SPG7Q9UQ90 795 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 MRVI1Q9Y6F6 885 aa6.82□□□□□ -1.32
VPS41-214ENST00000490924 PARP4Q9UKK3 1724 aaKnown RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 A0A1W2PQ27 194 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 A0A1W2PQ64 194 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 A0A1W2PQD8 194 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 USP17L3A6NCW0 530 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 USP17L4A6NCW7 530 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 GCP02774 474 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 KCNJ4P48050 445 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 RESTQ13127 1097 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 NMIQ13287 307 aaPredicted RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 TOB2Q14106 344 aaPredicted RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 GCKRQ14397 625 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 ADCK5Q3MIX3 580 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 NUTM2GQ5VZR2 741 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 USP17L2Q6R6M4 530 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 USP17L1Q7RTZ2 530 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 ANKLE2Q86XL3 938 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 WFDC8Q8IUA0 241 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 OGFOD1Q8N543 542 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 ZNF274Q96GC6 653 aaPredicted RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 ZNF396Q96N95 335 aaPredicted RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 HAUS7Q99871 368 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 NOL10Q9BSC4 688 aaKnown RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 NAT10Q9H0A0 1025 aaKnown RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 LGR6Q9HBX8 967 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 IMPACTQ9P2X3 320 aa6.81□□□□□ -1.32
VPS41-214ENST00000490924 RGS17Q9UGC6 210 aaPredicted RBP6.81□□□□□ -1.32
VPS41-214ENST00000490924 MAP3K15Q6ZN16 1313 aa6.8□□□□□ -1.32
VPS41-214ENST00000490924 SALL1Q9NSC2 1324 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms