RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 UBP1Q9NZI7 540 aa6.55□□□□□ -1.36
XRN1-213ENST00000489241 ZNF503-AS2A6NEH8 195 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 LRRC10BA6NIK2 292 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 CBX7O95931 251 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 MCM4P33991 863 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 ZNF165P49910 485 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 COL9A2Q14055 689 aaPredicted RBP6.54□□□□□ -1.36
XRN1-213ENST00000489241 ZNF124Q15973 351 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 SEZ6Q53EL9 994 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 REC114Q7Z4M0 266 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 SLITRK4Q8IW52 837 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 RASGRP4Q8TDF6 673 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 SLC38A3Q99624 504 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 DPH2Q9BQC3 489 aaPredicted RBP6.54□□□□□ -1.36
XRN1-213ENST00000489241 LNPKQ9C0E8 428 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 FAM53CQ9NYF3 392 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.54□□□□□ -1.36
XRN1-213ENST00000489241 TJP2Q9UDY2 1190 aa6.54□□□□□ -1.36
XRN1-213ENST00000489241 DBX1A6NMT0 343 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 SMARCA5O60264 1052 aaPredicted RBP6.53□□□□□ -1.36
XRN1-213ENST00000489241 ETV3P41162 512 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 RBL2Q08999 1139 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 MLECQ14165 292 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 SLC6A19Q695T7 634 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 MCF2L2Q86YR7 1114 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 FBXO27Q8NI29 283 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 CCDC120Q96HB5 630 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 TMEM87BQ96K49 555 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 ADAM30Q9UKF2 790 aa6.53□□□□□ -1.36
XRN1-213ENST00000489241 GLI1P08151 1106 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 FGRP09769 529 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 ATF4P18848 351 aaPredicted RBP6.52□□□□□ -1.37
XRN1-213ENST00000489241 GDNFP39905 211 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 TNK2Q07912 1038 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 MESP2Q0VG99 397 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 GIMAP6Q6P9H5 292 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 CDH24Q86UP0 819 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 REXO1Q8N1G1 1221 aaKnown RBP6.52□□□□□ -1.37
XRN1-213ENST00000489241 BHLHE22Q8NFJ8 381 aaPredicted RBP6.52□□□□□ -1.37
XRN1-213ENST00000489241 PIWIL2Q8TC59 973 aaKnown RBP6.52□□□□□ -1.37
XRN1-213ENST00000489241 KIRREL1Q96J84 757 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 FAM84AQ96KN4 292 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 BRMS1Q9HCU9 246 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 C19orf73Q9NVV2 129 aa6.52□□□□□ -1.37
XRN1-213ENST00000489241 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.51□□□□□ -1.37
XRN1-213ENST00000489241 PLCG1P19174 1290 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 CRKP46108 304 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 MLANAQ16655 118 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 FYB2Q5VWT5 728 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 MCATQ8IVS2 390 aaKnown RBP6.51□□□□□ -1.37
XRN1-213ENST00000489241 UBE2FQ969M7 185 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 SEC16BQ96JE7 1060 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 ALPK1Q96QP1 1244 aa6.51□□□□□ -1.37
XRN1-213ENST00000489241 ARID1BQ8NFD5 2236 aaPredicted RBP6.51□□□□□ -1.37
XRN1-213ENST00000489241 CADPSQ9ULU8 1353 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 IMPDH2P12268 514 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 GK5Q6ZS86 529 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 TMPRSS7Q7RTY8 843 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 DNAJB8Q8NHS0 232 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 ACSF2Q96CM8 615 aaPredicted RBP6.5□□□□□ -1.37
XRN1-213ENST00000489241 LIN37Q96GY3 246 aaPredicted RBP6.5□□□□□ -1.37
XRN1-213ENST00000489241 PUS7Q96PZ0 661 aaKnown RBP6.5□□□□□ -1.37
XRN1-213ENST00000489241 ZSWIM5Q9P217 1185 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 POLR3KQ9Y2Y1 108 aaPredicted RBP6.5□□□□□ -1.37
XRN1-213ENST00000489241 PCDHB14Q9Y5E9 798 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 PRR36Q9H6K5 1346 aa6.5□□□□□ -1.37
XRN1-213ENST00000489241 GRIN3BO60391 1043 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 ATE1O95260 518 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 LRRFIP1Q32MZ4 808 aaKnown RBP6.49□□□□□ -1.37
XRN1-213ENST00000489241 CCDC144BQ3MJ40 725 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 TMEM67Q5HYA8 995 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 CYB5D2Q8WUJ1 264 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 FERD3LQ96RJ6 166 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.49□□□□□ -1.37
XRN1-213ENST00000489241 EHMT1Q9H9B1 1298 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 GINM1Q9NU53 330 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 SLAMF8Q9P0V8 285 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 EFR3BQ9Y2G0 817 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 CORINQ9Y5Q5 1042 aa6.49□□□□□ -1.37
XRN1-213ENST00000489241 HTR3BO95264 441 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 NASPP49321 788 aaPredicted RBP6.48□□□□□ -1.37
XRN1-213ENST00000489241 CLCQ05315 142 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 TMEM201Q5SNT2 666 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 MPZL3Q6UWV2 235 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 NOP9Q86U38 636 aaKnown RBP6.48□□□□□ -1.37
XRN1-213ENST00000489241 PMFBP1Q8TBY8 1022 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 CPLX3Q8WVH0 158 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 Q96M66 194 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 CRBNQ96SW2 442 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 PPP1R16BQ96T49 567 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 REV1Q9UBZ9 1251 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 STRIP2Q9ULQ0 834 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 CEP131Q9UPN4 1083 aa6.48□□□□□ -1.37
XRN1-213ENST00000489241 ESR1P03372 595 aa6.47□□□□□ -1.37
XRN1-213ENST00000489241 RAC2P15153 192 aa6.47□□□□□ -1.37
XRN1-213ENST00000489241 CANXP27824 592 aaKnown RBP6.47□□□□□ -1.37
XRN1-213ENST00000489241 SOX9P48436 509 aa6.47□□□□□ -1.37
XRN1-213ENST00000489241 YARSP54577 528 aaKnown RBP6.47□□□□□ -1.37
XRN1-213ENST00000489241 FAM13CQ8NE31 585 aa6.47□□□□□ -1.37
XRN1-213ENST00000489241 HIRIP3Q9BW71 556 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms