RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 USP14P54578 494 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 TRDNQ13061 729 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 RNF20Q5VTR2 975 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 MB21D2Q8IYB1 491 aaPredicted RBP13.03□□□□□ -0.32
UBE4B-210ENST00000488228 NCOA7Q8NI08 942 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 CHMP4CQ96CF2 233 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 C12orf42Q96LP6 360 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 NUP88Q99567 741 aaPredicted RBP13.03□□□□□ -0.32
UBE4B-210ENST00000488228 VCPKMTQ9H867 229 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 CLIP2Q9UDT6 1046 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 TNKSO95271 1327 aa13.03□□□□□ -0.32
UBE4B-210ENST00000488228 SEC24BO95487 1268 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 TBC1D8O95759 1140 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 NDUFB10O96000 172 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 HSPA4P34932 840 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 ANTXR2P58335 489 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 OTUD7BQ6GQQ9 843 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 RCSD1Q6JBY9 416 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 CHST3Q7LGC8 479 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 PARK7Q99497 189 aaKnown RBP13.02□□□□□ -0.33
UBE4B-210ENST00000488228 UBAC1Q9BSL1 405 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 TANGO6Q9C0B7 1094 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 RPAP3Q9H6T3 665 aaPredicted RBP13.02□□□□□ -0.33
UBE4B-210ENST00000488228 GOPCQ9HD26 462 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 SAGE1Q9NXZ1 904 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 ZSWIM5Q9P217 1185 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 MTMR7Q9Y216 660 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 ADGRA2Q96PE1 1338 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 PLXNB2O15031 1838 aa13.02□□□□□ -0.33
UBE4B-210ENST00000488228 ALDH1A1P00352 501 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 HSPA8P11142 646 aaKnown RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 ADCK5Q3MIX3 580 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 FAM83BQ5T0W9 1011 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 IQCA1Q86XH1 822 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 ENAHQ8N8S7 591 aaPredicted RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 ZSCAN10Q96SZ4 725 aaPredicted RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 TMEM47Q9BQJ4 181 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 USP26Q9BXU7 913 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 ASCC2Q9H1I8 757 aaPredicted RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 ZCCHC17Q9NP64 241 aaKnown RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 TCP11L1Q9NUJ3 509 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 SNX14Q9Y5W7 946 aa13.01□□□□□ -0.33
UBE4B-210ENST00000488228 RBBP6Q7Z6E9 1792 aaKnown RBP13.01□□□□□ -0.33
UBE4B-210ENST00000488228 WDR46O15213 610 aaKnown RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 CA12O43570 354 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 TOP1P11387 765 aaKnown RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 ZKSCAN1P17029 563 aaPredicted RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 NOVP48745 357 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 IRX3P78415 501 aaPredicted RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 GMCL1P1Q8NEA9 526 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 SMCR8Q8TEV9 937 aaPredicted RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 LPAR1Q92633 364 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 TCEANC2Q96MN5 208 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 SENP2Q9HC62 589 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 GPHNQ9NQX3 736 aaPredicted RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 ISY1Q9ULR0 285 aaKnown RBP13□□□□□ -0.33
UBE4B-210ENST00000488228 SLC45A1Q9Y2W3 748 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 DOCK3Q8IZD9 2030 aa13□□□□□ -0.33
UBE4B-210ENST00000488228 F5H6K3 240 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 PRC1O43663 620 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 PEX10O60683 326 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 CPA1P15085 419 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 NT5C2P49902 561 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 KLRC3Q07444 240 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 PABPC4Q13310 644 aaKnown RBP eCLIP12.99□□□□□ -0.33
UBE4B-210ENST00000488228 SEC23AQ15436 765 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 PPP4R3BQ5MIZ7 849 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 SLFN13Q68D06 897 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
UBE4B-210ENST00000488228 KCNB2Q92953 911 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 MKL1Q969V6 931 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 JAKMIP1Q96N16 626 aaKnown RBP12.99□□□□□ -0.33
UBE4B-210ENST00000488228 CFHR5Q9BXR6 569 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 LRRC2Q9BYS8 371 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 ZFYVE28Q9HCC9 887 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 FBXO28Q9NVF7 368 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 CPA4Q9UI42 421 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 PNMA3Q9UL41 463 aa12.99□□□□□ -0.33
UBE4B-210ENST00000488228 SMCHD1A6NHR9 2005 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 IFIT3O14879 490 aaKnown RBP12.98□□□□□ -0.33
UBE4B-210ENST00000488228 EPB41L2O43491 1005 aaKnown RBP12.98□□□□□ -0.33
UBE4B-210ENST00000488228 FLOT1O75955 427 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 OSBPP22059 807 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 MCCP23508 829 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 HOXA7P31268 230 aaPredicted RBP12.98□□□□□ -0.33
UBE4B-210ENST00000488228 CTCFP49711 727 aaPredicted RBP12.98□□□□□ -0.33
UBE4B-210ENST00000488228 LBX1P52954 281 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 HERVK_113P62684 666 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 CCDC96Q2M329 555 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 CATSPERGQ6ZRH7 1159 aa12.98□□□□□ -0.33
UBE4B-210ENST00000488228 NEK1Q96PY6 1258 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms