RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 SCYL3Q8IZE3 742 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 FANCBQ8NB91 859 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 NUP133Q8WUM0 1156 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 MKL1Q969V6 931 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 GLIS2Q9BZE0 524 aaPredicted RBP12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 CLIP2Q9UDT6 1046 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 DOCK1Q14185 1865 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 SSC5DA1L4H1 1573 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 UNCXA6NJT0 531 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 SLURP2P0DP57 97 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 HMGN5P82970 282 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 SCRN1Q12765 414 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 TROAPQ12815 778 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 NOL9Q5SY16 702 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 AS3MTQ9HBK9 375 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 SENP2Q9HC62 589 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 HPS5Q9UPZ3 1129 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 CSADQ9Y600 493 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 USP17L5A8MUK1 530 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 EEF2P13639 858 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 PDIA4P13667 645 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 GUCY1A2P33402 732 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 FKBP1BP68106 108 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 CCT2P78371 535 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 TTLL12Q14166 644 aaPredicted RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 RRP1BQ14684 758 aaKnown RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 MAP1SQ66K74 1059 aaPredicted RBP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 CHADLQ6NUI6 762 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 NECAB1Q8N987 351 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 GOPCQ9HD26 462 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 SMC3Q9UQE7 1217 aa12.31□□□□□ -0.44
HLA-DMB-261ENST00000487996 USP2O75604 605 aaPredicted RBP12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 POTEIP0CG38 1075 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 POTEJP0CG39 1038 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 INPP5BP32019 993 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 SLC4A3P48751 1232 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 MAP3K9P80192 1104 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 MAP3K11Q16584 847 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 ANKRD13AQ8IZ07 590 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 GMCL1P1Q8NEA9 526 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 LZTS2Q9BRK4 669 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 MYL10Q9BUA6 226 aa12.3□□□□□ -0.44
HLA-DMB-261ENST00000487996 TOMM70O94826 608 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 PARP1P09874 1014 aaKnown RBP12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 GRM4Q14833 912 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 ASPRV1Q53RT3 343 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 GPATCH4Q5T3I0 446 aaKnown RBP12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 TRIM22Q8IYM9 498 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 LRRC47Q8N1G4 583 aaKnown RBP12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 FEZ1Q99689 392 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 NCOA5Q9HCD5 579 aaKnown RBP12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 RBM27Q9P2N5 1060 aaKnown RBP12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 TMX2Q9Y320 296 aa12.29□□□□□ -0.44
HLA-DMB-261ENST00000487996 PDHBP11177 359 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PRKCSHP14314 528 aaPredicted RBP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 IFNAR1P17181 557 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 RXRAP19793 462 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PDCP20941 246 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 USP14P54578 494 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 CLEC10AQ8IUN9 316 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 CCDC144CPQ8IYA2 1237 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 DCAF4Q8WV16 495 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 GMCL1Q96IK5 515 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 WDR18Q9BV38 432 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PAPPA2Q9BXP8 1791 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 SNHG28P0DPA3 235 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PTPRAP18433 802 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 SMARCA1P28370 1054 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 SLC1A4P43007 532 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 FXR2P51116 673 aaKnown RBP eCLIP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 JAG1P78504 1218 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 AKAP17AQ02040 695 aaKnown RBP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 ST3GAL1Q11201 340 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PRKG1Q13976 671 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 SHROOM1Q2M3G4 852 aaPredicted RBP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 RAB11FIP4Q86YS3 637 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 FAM184AQ8NB25 1140 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 SPRYD3Q8NCJ5 442 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 NSUN7Q8NE18 718 aaKnown RBP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 WASF1Q92558 559 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 LPAR1Q92633 364 aa12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 ZKSCAN4Q969J2 545 aaPredicted RBP12.28□□□□□ -0.44
HLA-DMB-261ENST00000487996 PTPDC1A2A3K4 754 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 USP17L10C9JJH3 530 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 F5H6K3 240 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 CDC27P30260 824 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 ADD1P35611 737 aaKnown RBP12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 KLRC3Q07444 240 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 SSRP1Q08945 709 aaKnown RBP12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 VGLL4Q14135 290 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 SLFN13Q68D06 897 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 TMTC3Q6ZXV5 915 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 SIAH1Q8IUQ4 282 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 C2orf69Q8N8R5 385 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 ZNF280CQ8ND82 737 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 SMARCC2Q8TAQ2 1214 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 RBM46Q8TBY0 533 aaKnown RBP12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 KIAA1683Q9H0B3 1180 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 VCPKMTQ9H867 229 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms