RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PKN1Q16512 942 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 WHAMMP3Q1A5X7 153 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 CDC5LQ99459 802 aaKnown RBP13.83□□□□□ -0.2
COL3A1-206ENST00000487010 NAPGQ99747 312 aaPredicted RBP13.83□□□□□ -0.2
COL3A1-206ENST00000487010 UBAC1Q9BSL1 405 aa13.83□□□□□ -0.2
COL3A1-206ENST00000487010 LIMA1Q9UHB6 759 aaKnown RBP13.83□□□□□ -0.2
COL3A1-206ENST00000487010 FEZ2Q9UHY8 353 aaPredicted RBP13.83□□□□□ -0.2
COL3A1-206ENST00000487010 LRRC10BA6NIK2 292 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 EIF3JO75822 258 aaKnown RBP13.82□□□□□ -0.2
COL3A1-206ENST00000487010 ARHGAP25P42331 645 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 PIP4K2BP78356 416 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 KRT31Q15323 416 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 POTEDQ86YR6 584 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 IQUBQ8NA54 791 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 ABHD10Q9NUJ1 306 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 CWC15Q9P013 229 aaKnown RBP13.82□□□□□ -0.2
COL3A1-206ENST00000487010 MYO1AQ9UBC5 1043 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 CTNND2Q9UQB3 1225 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 RTL9Q8NET4 1388 aa13.82□□□□□ -0.2
COL3A1-206ENST00000487010 CTAGE15A4D2H0 777 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 ABL1P00519 1130 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 CTAGE8P0CG41 777 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 ACTN2P35609 894 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 CCT6AP40227 531 aaKnown RBP13.81□□□□□ -0.2
COL3A1-206ENST00000487010 PPARAQ07869 468 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 CYP26C1Q6V0L0 522 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 CTAGE6Q86UF2 777 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 CTAGE4Q8IX94 777 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 PIGBQ92521 554 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 VPS18Q9P253 973 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 WNT7AO00755 349 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 N4BP3O15049 544 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 PRPF3O43395 683 aaKnown RBP13.81□□□□□ -0.2
COL3A1-206ENST00000487010 TFRCP02786 760 aaKnown RBP13.81□□□□□ -0.2
COL3A1-206ENST00000487010 TUBBP07437 444 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 RHOXF2BP0C7M4 288 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 VSNL1P62760 191 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 FUT2Q10981 343 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 RHOXF2Q9BQY4 288 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 GBP3Q9H0R5 595 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 SUGCTQ9HAC7 445 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.81□□□□□ -0.2
COL3A1-206ENST00000487010 TNKSO95271 1327 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 NUP98P52948 1817 aa13.81□□□□□ -0.2
COL3A1-206ENST00000487010 MYH2Q9UKX2 1941 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 RNF225M0QZC1 329 aaPredicted RBP13.8□□□□□ -0.2
COL3A1-206ENST00000487010 SNAP23O00161 211 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 PRDM1O75626 825 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 COPB1P53618 953 aaKnown RBP13.8□□□□□ -0.2
COL3A1-206ENST00000487010 TRIM14Q14142 442 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 ZNF174Q15697 407 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 MIGA1Q8NAN2 632 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 RWDD2AQ9UIY3 292 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 XDHP47989 1333 aa13.8□□□□□ -0.2
COL3A1-206ENST00000487010 N4BP1O75113 896 aaKnown RBP13.79□□□□□ -0.2
COL3A1-206ENST00000487010 COBLO75128 1261 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 CDC25AP30304 524 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 AMPD2Q01433 879 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 SPAG1Q07617 926 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 CASP8Q14790 479 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 RRAGBQ5VZM2 374 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 ESR2Q92731 530 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 STAMQ92783 540 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 NUP88Q99567 741 aaPredicted RBP13.79□□□□□ -0.2
COL3A1-206ENST00000487010 VPS16Q9H269 839 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 ANAPC4Q9UJX5 808 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 MYO6Q9UM54 1294 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 V9GY48 417 aaPredicted RBP13.79□□□□□ -0.2
COL3A1-206ENST00000487010 hCG_1642624A0A1W2PR95 340 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 ATP2C1P98194 919 aaPredicted RBP13.79□□□□□ -0.2
COL3A1-206ENST00000487010 E2F4Q16254 413 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 PLCH1Q4KWH8 1693 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 TCP11X2Q5H9J9 407 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 TTC38Q5R3I4 469 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 WWC2Q6AWC2 1192 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 TNFRSF25Q93038 417 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 BLZF1Q9H2G9 400 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 BRMS1Q9HCU9 246 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 FAN1Q9Y2M0 1017 aa13.79□□□□□ -0.2
COL3A1-206ENST00000487010 MINDY4BA8MYZ0 360 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 CYP19A1P11511 503 aaPredicted RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 PTGDRQ13258 359 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 NOM1Q5C9Z4 860 aaKnown RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 PDXDC2PQ6P474 469 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 ENAHQ8N8S7 591 aaPredicted RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 ANKRD20A12PQ8NF67 263 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 TAB2Q9NYJ8 693 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 MYH13Q9UKX3 1938 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 KCNJ18B7U540 433 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 GTPBP6O43824 516 aaPredicted RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 PLEKHA8P1O95397 391 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 KRT9P35527 623 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 BCAMP50895 628 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 EVA1CP58658 441 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 PAK1Q13153 545 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 KCNJ12Q14500 433 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 NPY5RQ15761 445 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 WDR93Q6P2C0 686 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 LEKR1Q6ZMV7 388 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms