RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 RPAP3Q9H6T3 665 aaPredicted RBP13.99□□□□□ -0.17
HPS4-214ENST00000485842 VCPKMTQ9H867 229 aa13.99□□□□□ -0.17
HPS4-214ENST00000485842 GOPCQ9HD26 462 aa13.99□□□□□ -0.17
HPS4-214ENST00000485842 CPA4Q9UI42 421 aa13.99□□□□□ -0.17
HPS4-214ENST00000485842 GTF3C3Q9Y5Q9 886 aa13.99□□□□□ -0.17
HPS4-214ENST00000485842 TAF6LQ9Y6J9 622 aa13.99□□□□□ -0.17
HPS4-214ENST00000485842 ADGRA2Q96PE1 1338 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 TLR2O60603 784 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 ZNF296Q8WUU4 475 aaPredicted RBP13.98□□□□□ -0.17
HPS4-214ENST00000485842 ZKSCAN3Q9BRR0 538 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 KRT23Q9C075 422 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 TANGO6Q9C0B7 1094 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 CNNM2Q9H8M5 875 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 IL17RBQ9NRM6 502 aa13.98□□□□□ -0.17
HPS4-214ENST00000485842 USP17L15C9J2P7 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L13C9JLJ4 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L11C9JVI0 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L18D6R9N7 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L22D6RA61 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L17D6RBQ6 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L19D6RCP7 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L20D6RJB6 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 E7EWF7 191 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 SLC27A2O14975 620 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 FKTNO75072 461 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 ECM2O94769 699 aaPredicted RBP13.97□□□□□ -0.17
HPS4-214ENST00000485842 HOXA7P31268 230 aaPredicted RBP13.97□□□□□ -0.17
HPS4-214ENST00000485842 USP17L24Q0WX57 530 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 TRDNQ13061 729 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 PPP4R3BQ5MIZ7 849 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 CREB3L3Q68CJ9 461 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
HPS4-214ENST00000485842 STOX1Q6ZVD7 989 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 RALYLQ86SE5 291 aaKnown RBP13.97□□□□□ -0.17
HPS4-214ENST00000485842 LPAR1Q92633 364 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 CHMP4CQ96CF2 233 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 PRDM10Q9NQV6 1147 aa13.97□□□□□ -0.17
HPS4-214ENST00000485842 ISY1Q9ULR0 285 aaKnown RBP13.97□□□□□ -0.17
HPS4-214ENST00000485842 WDR46O15213 610 aaKnown RBP13.96□□□□□ -0.17
HPS4-214ENST00000485842 REC8O95072 547 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 SP3Q02447 781 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 FAM83BQ5T0W9 1011 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 CD99L2Q8TCZ2 262 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 P2RX7Q99572 595 aaKnown RBP13.96□□□□□ -0.17
HPS4-214ENST00000485842 MTMR7Q9Y216 660 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 ZSWIM8A7E2V4 1837 aa13.96□□□□□ -0.17
HPS4-214ENST00000485842 F5H6K3 240 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 NDUFB10O96000 172 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 HERVK_113P62684 666 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 KLRC3Q07444 240 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 NECTIN1Q15223 517 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 NOM1Q5C9Z4 860 aaKnown RBP13.95□□□□□ -0.18
HPS4-214ENST00000485842 RNF20Q5VTR2 975 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 C17orf99Q6UX52 265 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 CATSPERGQ6ZRH7 1159 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 IQCA1Q86XH1 822 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 ANKRD13CQ8N6S4 541 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 NCOA7Q8NI08 942 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 MKL1Q969V6 931 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 NUP88Q99567 741 aaPredicted RBP13.95□□□□□ -0.18
HPS4-214ENST00000485842 UBAC1Q9BSL1 405 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 PAGR1Q9BTK6 254 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 TCP11L1Q9NUJ3 509 aa13.95□□□□□ -0.18
HPS4-214ENST00000485842 PARP14Q460N5 1801 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 FLOT1O75955 427 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 BCRP11274 1271 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 GCLCP48506 637 aaPredicted RBP13.94□□□□□ -0.18
HPS4-214ENST00000485842 NT5C2P49902 561 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 SLFN13Q68D06 897 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 CYB5R4Q7L1T6 521 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 GMCL1P1Q8NEA9 526 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 ERO1AQ96HE7 468 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 ZSCAN10Q96SZ4 725 aaPredicted RBP13.94□□□□□ -0.18
HPS4-214ENST00000485842 TMEM47Q9BQJ4 181 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 ZSWIM5Q9P217 1185 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 SYNPO2Q9UMS6 1093 aa13.94□□□□□ -0.18
HPS4-214ENST00000485842 TNKSO95271 1327 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 SPDYE16A6NNV3 312 aaPredicted RBP13.93□□□□□ -0.18
HPS4-214ENST00000485842 PEX10O60683 326 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 TOP1P11387 765 aaKnown RBP13.93□□□□□ -0.18
HPS4-214ENST00000485842 CCDC96Q2M329 555 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 CCDC178Q5BJE1 867 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 RCSD1Q6JBY9 416 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 RASGRP2Q7LDG7 609 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 FBXO28Q9NVF7 368 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 RLFQ13129 1914 aa13.93□□□□□ -0.18
HPS4-214ENST00000485842 BMP3P12645 472 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 ZKSCAN1P17029 563 aaPredicted RBP13.92□□□□□ -0.18
HPS4-214ENST00000485842 MCCP23508 829 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 SLC1A4P43007 532 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 NOVP48745 357 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 COG2Q14746 738 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 KIF22Q14807 665 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 FAM110CQ1W6H9 321 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 COL13A1Q5TAT6 717 aaPredicted RBP13.92□□□□□ -0.18
HPS4-214ENST00000485842 CHST3Q7LGC8 479 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 MB21D2Q8IYB1 491 aaPredicted RBP13.92□□□□□ -0.18
HPS4-214ENST00000485842 ENAHQ8N8S7 591 aaPredicted RBP13.92□□□□□ -0.18
HPS4-214ENST00000485842 GTF3C2Q8WUA4 911 aaPredicted RBP13.92□□□□□ -0.18
HPS4-214ENST00000485842 ATG4CQ96DT6 458 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms