RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 CELF2O95319 508 aaKnown RBP20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 METAP2P50579 478 aaKnown RBP eCLIP20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 TROAPQ12815 778 aa20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 RAB11FIP4Q86YS3 637 aa20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 RBM46Q8TBY0 533 aaKnown RBP20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 NUP133Q8WUM0 1156 aa20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 AS3MTQ9HBK9 375 aa20.71■□□□□ 0.91
SMARCD3-212ENST00000485610 UNCXA6NJT0 531 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 PTPRAP18433 802 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 MOB2Q70IA6 237 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 CCDC84Q86UT8 332 aaPredicted RBP20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 ZNF784Q8NCA9 323 aaPredicted RBP20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 CHMP4CQ96CF2 233 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 MAP3K14Q99558 947 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 LOC285556D6RIA3 1793 aa20.7■□□□□ 0.9
SMARCD3-212ENST00000485610 PASKQ96RG2 1323 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 BAZ2BQ9UIF8 2168 aaKnown RBP20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 RXRAP19793 462 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 CUL4AQ13619 759 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 RTN1Q16799 776 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 CCDC83Q8IWF9 413 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 C2orf69Q8N8R5 385 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 NECAB1Q8N987 351 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 GMCL1P1Q8NEA9 526 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 CTCFLQ8NI51 663 aaPredicted RBP20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 ACER1Q8TDN7 264 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 WDR18Q9BV38 432 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 DAXXQ9UER7 740 aaPredicted RBP20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 TMX2Q9Y320 296 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 A0A1W2PRG0 241 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 TOMM70O94826 608 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 CCT2P78371 535 aaKnown RBP20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 ST3GAL1Q11201 340 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 SCRN1Q12765 414 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 GRM4Q14833 912 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 PPP2R5BQ15173 497 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 LDLRAD1Q5T700 205 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 IPO9Q96P70 1041 aaKnown RBP20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 FEZ1Q99689 392 aa20.69■□□□□ 0.9
SMARCD3-212ENST00000485610 CCDC196A0A1B0GTZ2 297 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 UBE2Q2LH0YL09 131 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 HSP90AA1P07900 732 aaKnown RBP20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 KIF5BP33176 963 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 ECE1P42892 770 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 CCDC144CPQ8IYA2 1237 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 FANCBQ8NB91 859 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 NCOA5Q9HCD5 579 aaKnown RBP20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 GOPCQ9HD26 462 aa20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 RBM28Q9NW13 759 aaKnown RBP20.68■□□□□ 0.9
SMARCD3-212ENST00000485610 PARP14Q460N5 1801 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 DHX16O60231 1041 aaKnown RBP20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 PDHBP11177 359 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 ZNF280CQ8ND82 737 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 CLMNQ96JQ2 1002 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 KIAA1683Q9H0B3 1180 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 ELP3Q9H9T3 547 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 MTMR7Q9Y216 660 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 ZHX2Q9Y6X8 837 aa20.67■□□□□ 0.9
SMARCD3-212ENST00000485610 SPDYE5A6NIY4 337 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 SNHG28P0DPA3 235 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 CST9Q5W186 159 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 SLFN13Q68D06 897 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 ERO1BQ86YB8 467 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 DCAF4Q8WV16 495 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 INTS4Q96HW7 963 aaKnown RBP20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 VCPKMTQ9H867 229 aa20.66■□□□□ 0.9
SMARCD3-212ENST00000485610 USP17L10C9JJH3 530 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 F5H6K3 240 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 CPLX1O14810 134 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 RAD21O60216 631 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 NDUFB10O96000 172 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 PARP1P09874 1014 aaKnown RBP20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 CDC27P30260 824 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 USP14P54578 494 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 KLRC3Q07444 240 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 ASPRV1Q53RT3 343 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 CPLX2Q6PUV4 134 aaKnown RBP20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 RASGRP2Q7LDG7 609 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 GMCL1Q96IK5 515 aa20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 FAM217BQ9NTX9 383 aaPredicted RBP20.65■□□□□ 0.9
SMARCD3-212ENST00000485610 CDKL5O76039 1030 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 SLC4A3P48751 1232 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 GNAQP50148 359 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 BACE1P56817 501 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 PPATQ06203 517 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 FSTL1Q12841 308 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 SPP2Q13103 211 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 MTMR2Q13614 643 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 CCDC96Q2M329 555 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 LLPHQ9BRT6 129 aaKnown RBP20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 MAD2L2Q9UI95 211 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 AFG3L2Q9Y4W6 797 aa20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.64■□□□□ 0.89
SMARCD3-212ENST00000485610 PALM3A6NDB9 673 aaPredicted RBP20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 ADD1P35611 737 aaKnown RBP20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 SLC1A4P43007 532 aa20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 PPIL2Q13356 520 aa20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 ZYXQ15942 572 aaKnown RBP20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 GPATCH4Q5T3I0 446 aaKnown RBP20.63■□□□□ 0.89
SMARCD3-212ENST00000485610 TMTC3Q6ZXV5 915 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms