RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RAD21O60216 631 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 BACE1P56817 501 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 ZYXQ15942 572 aaKnown RBP14.33□□□□□ -0.12
SDC1-206ENST00000482879 RGMBQ6NW40 437 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 SYNE3Q6ZMZ3 975 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 NOL8Q76FK4 1167 aaKnown RBP14.33□□□□□ -0.12
SDC1-206ENST00000482879 CATIPQ7Z7H3 387 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 SGMS1Q86VZ5 419 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 PNMA1Q8ND90 353 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 CREBZFQ9NS37 354 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 BRPF3Q9ULD4 1205 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 SLC12A7Q9Y666 1083 aa14.33□□□□□ -0.12
SDC1-206ENST00000482879 KLF18A0A0U1RQI7 1052 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 C19orf81C9J6K1 198 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 CXCL11O14625 94 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 IRF6O14896 467 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 GJA5P36382 358 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 USP14P54578 494 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 MTMR2Q13614 643 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 SPRYD7Q5W111 196 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 USP17L2Q6R6M4 530 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 ZNF654Q8IZM8 581 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 CHMP4CQ96CF2 233 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 KIAA1683Q9H0B3 1180 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 VCPKMTQ9H867 229 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 GOPCQ9HD26 462 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 SYNPO2Q9UMS6 1093 aa14.32□□□□□ -0.12
SDC1-206ENST00000482879 BAZ2BQ9UIF8 2168 aaKnown RBP14.32□□□□□ -0.12
SDC1-206ENST00000482879 F5H6K3 240 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 HMGCS2P54868 508 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 KLRC3Q07444 240 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 MKRN3Q13064 507 aaKnown RBP14.31□□□□□ -0.12
SDC1-206ENST00000482879 SLFN13Q68D06 897 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 APOA5Q6Q788 366 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 PAXIP1Q6ZW49 1069 aaPredicted RBP14.31□□□□□ -0.12
SDC1-206ENST00000482879 RAB11FIP4Q86YS3 637 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 RASAL3Q86YV0 1011 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 GMCL1P1Q8NEA9 526 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 NUP133Q8WUM0 1156 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 HHIPL1Q96JK4 782 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 MYL10Q9BUA6 226 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 TMOD4Q9NZQ9 345 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 LIMCH1Q9UPQ0 1083 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 KCNH4Q9UQ05 1017 aa14.31□□□□□ -0.12
SDC1-206ENST00000482879 ZBTB43O43298 467 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 DDAH1O94760 285 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 CD2BP2O95400 341 aaKnown RBP14.3□□□□□ -0.12
SDC1-206ENST00000482879 NDUFB10O96000 172 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 ZBTB48P10074 688 aaPredicted RBP14.3□□□□□ -0.12
SDC1-206ENST00000482879 MCM2P49736 904 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 EVCP57679 992 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 TROAPQ12815 778 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 SNAPC2Q13487 334 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 DEFB115Q30KQ5 88 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 SH3D19Q5HYK7 790 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 KIAA1755Q5JYT7 1200 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 MICU3Q86XE3 530 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 SPICE1Q8N0Z3 855 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 CCDC102AQ96A19 550 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 ZNF274Q96GC6 653 aaPredicted RBP14.3□□□□□ -0.12
SDC1-206ENST00000482879 TSHZ2Q9NRE2 1034 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 EMILIN3Q9NT22 766 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 TPCN1Q9ULQ1 816 aa14.3□□□□□ -0.12
SDC1-206ENST00000482879 GOLGA8BA8MQT2 603 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 SLC10A3P09131 477 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 CALM1P0DP23 149 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 CALM2P0DP24 149 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 CALM3P0DP25 149 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 PDHBP11177 359 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 RXRAP19793 462 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 PDIA3P30101 505 aaKnown RBP14.29□□□□□ -0.12
SDC1-206ENST00000482879 GTF2A2P52657 109 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 DGKZQ13574 1117 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 CCDC96Q2M329 555 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 GADL1Q6ZQY3 521 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 CCDC144CPQ8IYA2 1237 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 DCAF4Q8WV16 495 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 LPAR1Q92633 364 aa14.29□□□□□ -0.12
SDC1-206ENST00000482879 ZSCAN31Q96LW9 406 aaPredicted RBP14.29□□□□□ -0.12
SDC1-206ENST00000482879 ISY1Q9ULR0 285 aaKnown RBP14.29□□□□□ -0.12
SDC1-206ENST00000482879 A0A0G2JLL6 359 aaPredicted RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 RASSF10A6NK89 507 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 GOLGA8AA7E2F4 631 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 PARP1P09874 1014 aaKnown RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 SLC1A4P43007 532 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 C1QTNF8P60827 252 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 CCT2P78371 535 aaKnown RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 STK3Q13188 491 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 GRM1Q13255 1194 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 GRM4Q14833 912 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 ME3Q16798 604 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 CYP4F22Q6NT55 531 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 FASTKD5Q7L8L6 764 aaKnown RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 RASGRP2Q7LDG7 609 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 PRRT2Q7Z6L0 340 aaPredicted RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 FANCBQ8NB91 859 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 CTCFLQ8NI51 663 aaPredicted RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 SNX21Q969T3 373 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 GMCL1Q96IK5 515 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 C12orf42Q96LP6 360 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms