RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 TLR2O60603 784 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 COL13A1Q5TAT6 717 aaPredicted RBP8.16□□□□□ -1.1
BRCA1-215ENST00000478531 LRRC47Q8N1G4 583 aaKnown RBP8.16□□□□□ -1.1
BRCA1-215ENST00000478531 STAG1Q8WVM7 1258 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 CHMP4CQ96CF2 233 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 TANGO6Q9C0B7 1094 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 ASCC2Q9H1I8 757 aaPredicted RBP8.16□□□□□ -1.1
BRCA1-215ENST00000478531 RNF41Q9H4P4 317 aaPredicted RBP8.16□□□□□ -1.1
BRCA1-215ENST00000478531 RPAP3Q9H6T3 665 aaPredicted RBP8.16□□□□□ -1.1
BRCA1-215ENST00000478531 PRDM10Q9NQV6 1147 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 CLIP2Q9UDT6 1046 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 STX8Q9UNK0 236 aa8.16□□□□□ -1.1
BRCA1-215ENST00000478531 RLFQ13129 1914 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 EIF5BO60841 1220 aaKnown RBP8.15□□□□□ -1.1
BRCA1-215ENST00000478531 FKTNO75072 461 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 TTLL1O95922 423 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 OSBPP22059 807 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 KIAA1755Q5JYT7 1200 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 SIAH1Q8IUQ4 282 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 NEDD1Q8NHV4 660 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 GOPCQ9HD26 462 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 MTMR4Q9NYA4 1195 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 ISY1Q9ULR0 285 aaKnown RBP8.15□□□□□ -1.1
BRCA1-215ENST00000478531 MTMR7Q9Y216 660 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 SLC45A1Q9Y2W3 748 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 TMX2Q9Y320 296 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 RBM8AQ9Y5S9 174 aaKnown RBP8.15□□□□□ -1.1
BRCA1-215ENST00000478531 ADGRA2Q96PE1 1338 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 DOCK3Q8IZD9 2030 aa8.15□□□□□ -1.1
BRCA1-215ENST00000478531 IGKV6D-41A0A0C4DH26 115 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 B4E1Z4 1266 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 SP3Q02447 781 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 CACNB1Q02641 598 aaPredicted RBP8.15□□□□□ -1.11
BRCA1-215ENST00000478531 TPRNQ4KMQ1 711 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 ANKRD13CQ8N6S4 541 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 CD99L2Q8TCZ2 262 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 ESR2Q92731 530 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 C12orf42Q96LP6 360 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 ZKSCAN3Q9BRR0 538 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 LSG1Q9H089 658 aaKnown RBP8.15□□□□□ -1.11
BRCA1-215ENST00000478531 VCPKMTQ9H867 229 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 NYAP2Q9P242 653 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 A0A0G2JMZ2 1700 aa8.15□□□□□ -1.11
BRCA1-215ENST00000478531 PEX10O60683 326 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 KDM4AO75164 1064 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 CYP21A2P08686 494 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 FGRP09769 529 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 HERVK_113P62684 666 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 NKX2-3Q8TAU0 364 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 NUP88Q99567 741 aaPredicted RBP8.14□□□□□ -1.11
BRCA1-215ENST00000478531 P2RX7Q99572 595 aaKnown RBP8.14□□□□□ -1.11
BRCA1-215ENST00000478531 PAGR1Q9BTK6 254 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 ARHGAP39Q9C0H5 1083 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 IL17RBQ9NRM6 502 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 TAF6LQ9Y6J9 622 aa8.14□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L15C9J2P7 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L13C9JLJ4 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L11C9JVI0 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L18D6R9N7 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L22D6RA61 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L17D6RBQ6 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L19D6RCP7 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L20D6RJB6 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 WDR46O15213 610 aaKnown RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 FLOT1O75955 427 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 PCP11498 1178 aaKnown RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 HOXA7P31268 230 aaPredicted RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 USP17L24Q0WX57 530 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 KIF22Q14807 665 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 NOM1Q5C9Z4 860 aaKnown RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 FAM83BQ5T0W9 1011 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 C17orf99Q6UX52 265 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 LPAR1Q92633 364 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 MAP4K1Q92918 833 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 ERO1AQ96HE7 468 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 NDUFB10O96000 172 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 BCRP11274 1271 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 LACTBP83111 547 aaPredicted RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 CAP1Q01518 475 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 TRDNQ13061 729 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 PPP4R3BQ5MIZ7 849 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 CATSPERGQ6ZRH7 1159 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 RASGRP2Q7LDG7 609 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 CTU1Q7Z7A3 348 aaKnown RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 RALYLQ86SE5 291 aaKnown RBP8.13□□□□□ -1.11
BRCA1-215ENST00000478531 KRT23Q9C075 422 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 CNNM2Q9H8M5 875 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 TRIM17Q9Y577 477 aa8.13□□□□□ -1.11
BRCA1-215ENST00000478531 PLXNB2O15031 1838 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 SPDYE16A6NNV3 312 aaPredicted RBP8.12□□□□□ -1.11
BRCA1-215ENST00000478531 E7EWF7 191 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 F5H6K3 240 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 GCLCP48506 637 aaPredicted RBP8.12□□□□□ -1.11
BRCA1-215ENST00000478531 KLRC3Q07444 240 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 FAM110CQ1W6H9 321 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 STOX1Q6ZVD7 989 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 IQCA1Q86XH1 822 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 TNS4Q8IZW8 715 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 UBAC1Q9BSL1 405 aa8.12□□□□□ -1.11
BRCA1-215ENST00000478531 TXNRD2Q9NNW7 524 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms