RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 MMP14P50281 582 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 DYNLL1P63167 89 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 CCT2P78371 535 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 CTDSPL2Q05D32 466 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 SSRP1Q08945 709 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 RTN1Q16799 776 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 ZSCAN23Q3MJ62 389 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 SWT1Q5T5J6 900 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 SOGA3Q5TF21 947 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 CAVIN1Q6NZI2 390 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 LRSAM1Q6UWE0 723 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 HHIPL2Q6UWX4 724 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 CHST3Q7LGC8 479 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 C2CD5Q86YS7 1000 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 FANCBQ8NB91 859 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 KCNG4Q8TDN1 519 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 KLRG1Q96E93 195 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 SPATA32Q96LK8 384 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 DDX19AQ9NUU7 478 aaKnown RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 RCOR1Q9UKL0 485 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 NAP1L2Q9ULW6 460 aaPredicted RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 CNPY2Q9Y2B0 182 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 SNED1Q8TER0 1413 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 TNKSO95271 1327 aa7.74□□□□□ -1.17
LDB3-206ENST00000477489 COL2A1P02458 1487 aaPredicted RBP7.74□□□□□ -1.17
LDB3-206ENST00000477489 PLIN4Q96Q06 1357 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 WTIPA6NIX2 430 aaPredicted RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 FIBPO43427 364 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 CAVIN2O95810 425 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 POLD1P28340 1107 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 KIF5BP33176 963 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 BTDP43251 543 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 SAFBQ15424 915 aaKnown RBP eCLIP7.73□□□□□ -1.17
LDB3-206ENST00000477489 RRP12Q5JTH9 1297 aaKnown RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 IFIT1BQ5T764 474 aaKnown RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 STRIP1Q5VSL9 837 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 FOXD4L5Q5VV16 416 aaPredicted RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 TTC6Q86TZ1 520 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 MICU3Q86XE3 530 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 ZNF654Q8IZM8 581 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 LEO1Q8WVC0 666 aaPredicted RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 FOXD4L4Q8WXT5 416 aaPredicted RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 ANP32BQ92688 251 aaKnown RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 DDX11Q96FC9 970 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 LZTS2Q9BRK4 669 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 GRPEL1Q9HAV7 217 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 NCOA5Q9HCD5 579 aaKnown RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 TOMM22Q9NS69 142 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 POLR3EQ9NVU0 708 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 MCM9Q9NXL9 1143 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 RTEL1Q9NZ71 1219 aa7.73□□□□□ -1.17
LDB3-206ENST00000477489 ZNF646O15015 1829 aaPredicted RBP7.73□□□□□ -1.17
LDB3-206ENST00000477489 MYH8P13535 1937 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 A0A1W2PQ27 194 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 A0A1W2PQ64 194 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 A0A1W2PQD8 194 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 CTAGE5O15320 804 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 PRPF3O43395 683 aaKnown RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 RANBP6O60518 1105 aaKnown RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 U2AF2P26368 475 aaKnown RBP eCLIP7.72□□□□□ -1.17
LDB3-206ENST00000477489 SMARCA1P28370 1054 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 ADD1P35611 737 aaKnown RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 NASPP49321 788 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 RHBDL3P58872 404 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 HTRA3P83110 453 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 AKAP17AQ02040 695 aaKnown RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 TROAPQ12815 778 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 TJAP1Q5JTD0 557 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 TEX11Q8IYF3 940 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 RTKN2Q8IZC4 609 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 CRACR2BQ8N4Y2 399 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 ENAHQ8N8S7 591 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 CTCFLQ8NI51 663 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 C7orf43Q8WVR3 580 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 ALG1Q9BT22 464 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 GZF1Q9H116 711 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 FOXP1Q9H334 677 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 FAM217BQ9NTX9 383 aaPredicted RBP7.72□□□□□ -1.17
LDB3-206ENST00000477489 TMEM63CQ9P1W3 806 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 SWAP70Q9UH65 585 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 SLX4Q8IY92 1834 aa7.72□□□□□ -1.17
LDB3-206ENST00000477489 TSPY2A6NKD2 308 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 PPP6R2O75170 966 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 BMP15O95972 392 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 NOVP48745 357 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 GTF2IP78347 998 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 KIF23Q02241 960 aaPredicted RBP7.71□□□□□ -1.18
LDB3-206ENST00000477489 KIAA2012Q0VF49 1180 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 UVSSAQ2YD98 709 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 RILPL1Q5EBL4 403 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 MYSM1Q5VVJ2 828 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 C16orf86Q6ZW13 317 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 NBPF11Q86T75 865 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 FERMT3Q86UX7 667 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 ZNF444Q8N0Y2 327 aaPredicted RBP7.71□□□□□ -1.18
LDB3-206ENST00000477489 SH3RF3Q8TEJ3 882 aaPredicted RBP7.71□□□□□ -1.18
LDB3-206ENST00000477489 ZNF622Q969S3 477 aaKnown RBP eCLIP7.71□□□□□ -1.18
LDB3-206ENST00000477489 TEKT1Q969V4 418 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 ZDHHC15Q96MV8 337 aa7.71□□□□□ -1.18
LDB3-206ENST00000477489 PSMD1Q99460 953 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms