RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 TSPY2A6NKD2 308 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 RANBP6O60518 1105 aaKnown RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 OSBPP22059 807 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 IRX3P78415 501 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 LACTBP83111 547 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 PABPC4Q13310 644 aaKnown RBP eCLIP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 MFSD6Q6ZSS7 791 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 OTOP1Q7RTM1 612 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 CTU1Q7Z7A3 348 aaKnown RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 TNS4Q8IZW8 715 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 LRRC47Q8N1G4 583 aaKnown RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 LSG1Q9H089 658 aaKnown RBP11.49□□□□□ -0.57
HDAC3-208ENST00000476739 VCPKMTQ9H867 229 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 TOMM22Q9NS69 142 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 NYAP2Q9P242 653 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 TRIM17Q9Y577 477 aa11.49□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L15C9J2P7 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L13C9JLJ4 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L11C9JVI0 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L18D6R9N7 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L22D6RA61 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L17D6RBQ6 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L19D6RCP7 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L20D6RJB6 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 RAD21O60216 631 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 CNMDO75829 334 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 HERVK_113P62684 666 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 USP17L24Q0WX57 530 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 IMMTQ16891 758 aaKnown RBP11.48□□□□□ -0.57
HDAC3-208ENST00000476739 Q3C1V9 767 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 MAP4K1Q92918 833 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 MKL1Q969V6 931 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 CHMP4CQ96CF2 233 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 ERO1AQ96HE7 468 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 NUP88Q99567 741 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-208ENST00000476739 RBPJLQ9UBG7 517 aa11.48□□□□□ -0.57
HDAC3-208ENST00000476739 MGAMO43451 1857 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 PARP14Q460N5 1801 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 SPDYE16A6NNV3 312 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-208ENST00000476739 CDC45O75419 566 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 TTLL1O95922 423 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 NDUFB10O96000 172 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 CYP21A2P08686 494 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 PSMC4P43686 418 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 FAM83BQ5T0W9 1011 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 RASGRP2Q7LDG7 609 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 TRIM47Q96LD4 638 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 ZKSCAN3Q9BRR0 538 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 TANGO6Q9C0B7 1094 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 SH2D4AQ9H788 454 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 CTNNA3Q9UI47 895 aa11.47□□□□□ -0.57
HDAC3-208ENST00000476739 B4E1Z4 1266 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 F5H6K3 240 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 WDR46O15213 610 aaKnown RBP11.46□□□□□ -0.57
HDAC3-208ENST00000476739 KDM4AO75164 1064 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 GCLCP48506 637 aaPredicted RBP11.46□□□□□ -0.57
HDAC3-208ENST00000476739 NOVP48745 357 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 KLRC3Q07444 240 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 FAM110CQ1W6H9 321 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 STOX1Q6ZVD7 989 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 LPAR1Q92633 364 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 PAGR1Q9BTK6 254 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 RNF41Q9H4P4 317 aaPredicted RBP11.46□□□□□ -0.57
HDAC3-208ENST00000476739 EFCC1Q9HA90 598 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 GOPCQ9HD26 462 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 FBXO28Q9NVF7 368 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 BTBD7Q9P203 1132 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 STX8Q9UNK0 236 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 RBM8AQ9Y5S9 174 aaKnown RBP11.46□□□□□ -0.57
HDAC3-208ENST00000476739 U3KPZ7 1027 aaPredicted RBP11.46□□□□□ -0.57
HDAC3-208ENST00000476739 DOCK3Q8IZD9 2030 aa11.46□□□□□ -0.57
HDAC3-208ENST00000476739 FLOT1O75955 427 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 PCP11498 1178 aaKnown RBP11.45□□□□□ -0.58
HDAC3-208ENST00000476739 DSG3P32926 999 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 COL9A3Q14050 684 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-208ENST00000476739 COG2Q14746 738 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 RCSD1Q6JBY9 416 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 SAMD1Q6SPF0 538 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-208ENST00000476739 ESR2Q92731 530 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 ATG4CQ96DT6 458 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 ABHD8Q96I13 439 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 TMEM47Q9BQJ4 181 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 ANO2Q9NQ90 1003 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 TCP11L1Q9NUJ3 509 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 ZSWIM5Q9P217 1185 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 MORF4L1Q9UBU8 362 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 GABRQQ9UN88 632 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 PTPN22Q9Y2R2 807 aa11.45□□□□□ -0.58
HDAC3-208ENST00000476739 A0A0G2JMZ2 1700 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 E7EWF7 191 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 FMNL1O95466 1100 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-208ENST00000476739 ERVK-9P63128 1117 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 ERVK-24P63145 666 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 KIF22Q14807 665 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 NECTIN1Q15223 517 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 SLFN13Q68D06 897 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 FBXO46Q6PJ61 603 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-208ENST00000476739 LBX2Q6XYB7 198 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 KIAA1211Q6ZU35 1233 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 CYB5R4Q7L1T6 521 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms