RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 GDF15Q99988 308 aa11.15□□□□□ -0.62
CPSF4-211ENST00000471455 OGDHLQ9ULD0 1010 aa11.15□□□□□ -0.62
CPSF4-211ENST00000471455 ZBTB21Q9ULJ3 1066 aa11.15□□□□□ -0.62
CPSF4-211ENST00000471455 ERVK-9P63128 1117 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 ERVK-24P63145 666 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L2Q6R6M4 530 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 METTL16Q86W50 562 aaKnown RBP11.14□□□□□ -0.63
CPSF4-211ENST00000471455 MAPKAPK5Q8IW41 473 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 TTC13Q8NBP0 860 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 TGFBRAP1Q8WUH2 860 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 ZNF512BQ96KM6 892 aaPredicted RBP11.14□□□□□ -0.63
CPSF4-211ENST00000471455 FEZ1Q99689 392 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 APBA2Q99767 749 aa11.14□□□□□ -0.63
CPSF4-211ENST00000471455 ZMYND8Q9ULU4 1186 aaPredicted RBP11.14□□□□□ -0.63
CPSF4-211ENST00000471455 DDX60LQ5H9U9 1706 aaKnown RBP11.14□□□□□ -0.63
CPSF4-211ENST00000471455 ALPK3Q96L96 1907 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 TRIM27P14373 513 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 USP14P54578 494 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 PRSS12P56730 875 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 RRP1BQ14684 758 aaKnown RBP11.13□□□□□ -0.63
CPSF4-211ENST00000471455 LRIT3Q3SXY7 679 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 TNNI3KQ59H18 835 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 PLEKHH3Q7Z736 793 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 TDHQ8IZJ6 230 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 FRAT1Q92837 279 aaPredicted RBP11.13□□□□□ -0.63
CPSF4-211ENST00000471455 LRCH3Q96II8 777 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 P2RX7Q99572 595 aaKnown RBP11.13□□□□□ -0.63
CPSF4-211ENST00000471455 FPGT-TNNI3KV9GXZ4 949 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 CUL9Q8IWT3 2517 aa11.13□□□□□ -0.63
CPSF4-211ENST00000471455 FOCADQ5VW36 1801 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 PNMA6EA0A0J9YXQ4 647 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 DLL1O00548 723 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 SOX1O00570 391 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-211ENST00000471455 MSCO60682 206 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 GDF11O95390 407 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 MAGEA10P43363 369 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-211ENST00000471455 TRIM32Q13049 653 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 MFSD14CQ5VZR4 134 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 GPR142Q7Z601 462 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 PAGR1Q9BTK6 254 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 UBE2OQ9C0C9 1292 aaKnown RBP11.12□□□□□ -0.63
CPSF4-211ENST00000471455 SNRKQ9NRH2 765 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 SEPT9Q9UHD8 586 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-211ENST00000471455 PALD1Q9ULE6 856 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 RABGAP1Q9Y3P9 1069 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 SIPA1L1O43166 1804 aa11.12□□□□□ -0.63
CPSF4-211ENST00000471455 SZT2Q5T011 3432 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L15C9J2P7 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L13C9JLJ4 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L11C9JVI0 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L18D6R9N7 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L22D6RA61 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L17D6RBQ6 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L19D6RCP7 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L20D6RJB6 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 SURF6O75683 361 aaKnown RBP11.11□□□□□ -0.63
CPSF4-211ENST00000471455 SYN1P17600 705 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 CYP7A1P22680 504 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP5P45974 858 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 USP17L24Q0WX57 530 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 PTGDRQ13258 359 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 ZKSCAN2Q63HK3 967 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 TTC6Q86TZ1 520 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 DEFB123Q8N688 67 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 KCTD12Q96CX2 325 aaKnown RBP11.11□□□□□ -0.63
CPSF4-211ENST00000471455 C12orf42Q96LP6 360 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 DBNDD2Q9BQY9 259 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 EHD4Q9H223 541 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 DNAJC18Q9H819 358 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 TXNRD2Q9NNW7 524 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 RBPJLQ9UBG7 517 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 SAP30BPQ9UHR5 308 aaKnown RBP11.11□□□□□ -0.63
CPSF4-211ENST00000471455 SERPINB13Q9UIV8 391 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.11□□□□□ -0.63
CPSF4-211ENST00000471455 IVNS1ABPQ9Y6Y0 642 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 PLXNB2O15031 1838 aa11.11□□□□□ -0.63
CPSF4-211ENST00000471455 CCER2I3L3R5 266 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 GPR37O15354 613 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 IDH1O75874 414 aaKnown RBP11.1□□□□□ -0.63
CPSF4-211ENST00000471455 GH2P01242 217 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 CYP2E1P05181 493 aaPredicted RBP11.1□□□□□ -0.63
CPSF4-211ENST00000471455 COL6A1P12109 1028 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 CACNB2Q08289 660 aaPredicted RBP11.1□□□□□ -0.63
CPSF4-211ENST00000471455 MAP3K12Q12852 859 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 MAP2K5Q13163 448 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 MORN1Q5T089 497 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 WDR78Q5VTH9 848 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 FTSJ3Q8IY81 847 aaKnown RBP11.1□□□□□ -0.63
CPSF4-211ENST00000471455 SSH3Q8TE77 659 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 USP6NLQ92738 828 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 CLUAP1Q96AJ1 413 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 LBHD1Q9BQE6 289 aaPredicted RBP11.1□□□□□ -0.63
CPSF4-211ENST00000471455 CABP5Q9NP86 173 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 STXBP5LQ9Y2K9 1186 aa11.1□□□□□ -0.63
CPSF4-211ENST00000471455 PFASO15067 1338 aa11.09□□□□□ -0.63
CPSF4-211ENST00000471455 CDK5RAP2Q96SN8 1893 aa11.09□□□□□ -0.63
CPSF4-211ENST00000471455 SLC15A5A6NIM6 579 aa11.09□□□□□ -0.63
CPSF4-211ENST00000471455 ZAP70P43403 619 aa11.09□□□□□ -0.63
CPSF4-211ENST00000471455 ATP8B2P98198 1209 aa11.09□□□□□ -0.63
CPSF4-211ENST00000471455 RAB3GAP1Q15042 981 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms