RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 USP6NLQ92738 828 aa16.16■□□□□ 0.18
HMGN1-211ENST00000471260 HTATIP2Q9BUP3 242 aa16.16■□□□□ 0.18
HMGN1-211ENST00000471260 PORCNQ9H237 461 aa16.16■□□□□ 0.18
HMGN1-211ENST00000471260 ZNF287Q9HBT7 754 aa16.16■□□□□ 0.18
HMGN1-211ENST00000471260 HMX1Q9NP08 348 aaPredicted RBP16.16■□□□□ 0.18
HMGN1-211ENST00000471260 MYH8P13535 1937 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 CYP2D7A0A087X1C5 515 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 SPDYE16A6NNV3 312 aaPredicted RBP16.15■□□□□ 0.18
HMGN1-211ENST00000471260 GPAA1O43292 621 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 TFRCP02786 760 aaKnown RBP16.15■□□□□ 0.18
HMGN1-211ENST00000471260 MX1P20591 662 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 CYP2B6P20813 491 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 RGS2P41220 211 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 MORN1Q5T089 497 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 SIAH1Q8IUQ4 282 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 DEFB118Q96PH6 123 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 CRISPLD2Q9H0B8 497 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.15■□□□□ 0.182e-13■■■■□ 21.6
HMGN1-211ENST00000471260 VCPKMTQ9H867 229 aa16.15■□□□□ 0.18
HMGN1-211ENST00000471260 CWC22Q9HCG8 908 aaKnown RBP16.15■□□□□ 0.18
HMGN1-211ENST00000471260 PATL2C9JE40 543 aaKnown RBP16.14■□□□□ 0.17
HMGN1-211ENST00000471260 PEX10O60683 326 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 SLC34A2O95436 690 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 ANKRD45Q5TZF3 282 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 TICAM2Q86XR7 235 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 ANKLE1Q8NAG6 615 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 TRIB2Q92519 343 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 ANP32EQ9BTT0 268 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 PLXNB2O15031 1838 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 SALL3Q9BXA9 1300 aa16.14■□□□□ 0.17
HMGN1-211ENST00000471260 ROBO3Q96MS0 1386 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 SLC15A5A6NIM6 579 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 WDR46O15213 610 aaKnown RBP16.13■□□□□ 0.17
HMGN1-211ENST00000471260 FARP2O94887 1054 aaPredicted RBP16.13■□□□□ 0.17
HMGN1-211ENST00000471260 MAP2K5Q13163 448 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 MAP3K21Q5TCX8 1036 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 APBA2Q99767 749 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 FSD1Q9BTV5 496 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 NACAP1Q9BZK3 213 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 TANGO6Q9C0B7 1094 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 MKNK2Q9HBH9 465 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 BTBD7Q9P203 1132 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 STAP2Q9UGK3 403 aa16.13■□□□□ 0.17
HMGN1-211ENST00000471260 SMIM22K7EJ46 135 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 STRNO43815 780 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 HOXC6P09630 235 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 EEF2P13639 858 aaKnown RBP16.12■□□□□ 0.17
HMGN1-211ENST00000471260 ZKSCAN1P17029 563 aaPredicted RBP16.12■□□□□ 0.17
HMGN1-211ENST00000471260 PTPREP23469 700 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 DSG3P32926 999 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 TDO2P48775 406 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 ZMYM1Q5SVZ6 1142 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 IFNL3Q8IZI9 196 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 SHCBP1Q8NEM2 672 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 OTUD7AQ8TE49 926 aaPredicted RBP16.12■□□□□ 0.17
HMGN1-211ENST00000471260 GOPCQ9HD26 462 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 IVNS1ABPQ9Y6Y0 642 aa16.12■□□□□ 0.17
HMGN1-211ENST00000471260 MINDY4BA8MYZ0 360 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 M0R2C6 588 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 FLOT1O75955 427 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 APPP05067 770 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 RASA1P20936 1047 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 GRB14Q14449 540 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 KIAA1755Q5JYT7 1200 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 ZNF444Q8N0Y2 327 aaPredicted RBP16.11■□□□□ 0.17
HMGN1-211ENST00000471260 DPF3Q92784 378 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 EVI5LQ96CN4 794 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 SPATC1LQ9H0A9 340 aa16.11■□□□□ 0.17
HMGN1-211ENST00000471260 PRKAR2AP13861 404 aaKnown RBP16.1■□□□□ 0.17
HMGN1-211ENST00000471260 TRIM32Q13049 653 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 WDR78Q5VTH9 848 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 CLEC10AQ8IUN9 316 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 SPICE1Q8N0Z3 855 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.1■□□□□ 0.17
HMGN1-211ENST00000471260 RWDD1Q9H446 243 aaPredicted RBP16.1■□□□□ 0.17
HMGN1-211ENST00000471260 EPB41L4AQ9HCS5 686 aaPredicted RBP16.1■□□□□ 0.17
HMGN1-211ENST00000471260 NYAP2Q9P242 653 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 SYNPO2Q9UMS6 1093 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 ADAMTS5Q9UNA0 930 aa16.1■□□□□ 0.17
HMGN1-211ENST00000471260 SLC3A2P08195 630 aaKnown RBP16.09■□□□□ 0.17
HMGN1-211ENST00000471260 PDE1AP54750 535 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 ATP2B2Q01814 1243 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 CACNB2Q08289 660 aaPredicted RBP16.09■□□□□ 0.17
HMGN1-211ENST00000471260 MFSD14CQ5VZR4 134 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 NECAB2Q7Z6G3 386 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 ABRAQ8N0Z2 381 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 MOV10L1Q9BXT6 1211 aaKnown RBP16.09■□□□□ 0.17
HMGN1-211ENST00000471260 MROH8Q9H579 483 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 OGDHLQ9ULD0 1010 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 NR2E3Q9Y5X4 410 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 RLFQ13129 1914 aa16.09■□□□□ 0.17
HMGN1-211ENST00000471260 SLC25A27O95847 323 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 PDE4BQ07343 736 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 SMC5Q8IY18 1101 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 MKL1Q969V6 931 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 SEC62Q99442 399 aaKnown RBP16.08■□□□□ 0.16
HMGN1-211ENST00000471260 NAPBQ9H115 298 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 SLC5A4Q9NY91 659 aa16.08■□□□□ 0.16
HMGN1-211ENST00000471260 GREB1LQ9C091 1923 aaPredicted RBP16.07■□□□□ 0.16
HMGN1-211ENST00000471260 IGKV6D-41A0A0C4DH26 115 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms