RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 UBAC1Q9BSL1 405 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 MTA3Q9BTC8 594 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 TM6SF1Q9BZW5 370 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 SH2D4AQ9H788 454 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 VCPKMTQ9H867 229 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 SENP2Q9HC62 589 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 ZSWIM6Q9HCJ5 1215 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 GPHNQ9NQX3 736 aaPredicted RBP12.42□□□□□ -0.42
SMC1A-206ENST00000470241 SYNPO2Q9UMS6 1093 aa12.42□□□□□ -0.42
SMC1A-206ENST00000470241 PHIPQ8WWQ0 1821 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 WDR19Q8NEZ3 1342 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 F5H6K3 240 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 SH2B2O14492 632 aaPredicted RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 IFIT3O14879 490 aaKnown RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 HMGB1P09429 215 aaKnown RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 CASTP20810 708 aaKnown RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 RPS6KB1P23443 525 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 PSMA5P28066 241 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TM4SF4P48230 202 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 USP14P54578 494 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 KLRC3Q07444 240 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TMEM67Q5HYA8 995 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TREML2Q5T2D2 321 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 BLOC1S2Q6QNY1 142 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 FASTKD5Q7L8L6 764 aaKnown RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 PROCA1Q8NCQ7 364 aaPredicted RBP12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TMEM87BQ96K49 555 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TCEANC2Q96MN5 208 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 LRRC2Q9BYS8 371 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 TMOD4Q9NZQ9 345 aa12.41□□□□□ -0.42
SMC1A-206ENST00000470241 BTBD19C9JJ37 291 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 IGF2BP3O00425 579 aaKnown RBP eCLIP12.4□□□□□ -0.42
SMC1A-206ENST00000470241 NDUFB10O96000 172 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 VCAM1P19320 739 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 INHBEP58166 350 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 SREBF2Q12772 1141 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 IFIT1BQ5T764 474 aaKnown RBP12.4□□□□□ -0.42
SMC1A-206ENST00000470241 GADL1Q6ZQY3 521 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 IFNL1Q8IU54 200 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 REM2Q8IYK8 340 aaPredicted RBP12.4□□□□□ -0.42
SMC1A-206ENST00000470241 SPICE1Q8N0Z3 855 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 FAM43AQ8N2R8 423 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 GMCL1P1Q8NEA9 526 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 LPAR1Q92633 364 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 KIF2CQ99661 725 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 UPF3BQ9BZI7 483 aaKnown RBP12.4□□□□□ -0.42
SMC1A-206ENST00000470241 UPF2Q9HAU5 1272 aaKnown RBP12.4□□□□□ -0.42
SMC1A-206ENST00000470241 LY9Q9HBG7 655 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 GOPCQ9HD26 462 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 AGTPBP1Q9UPW5 1226 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 THSD7BQ9C0I4 1608 aa12.4□□□□□ -0.42
SMC1A-206ENST00000470241 MYH8P13535 1937 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 ERICH2A1L162 156 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 WTAPQ15007 396 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 SART3Q15020 963 aaKnown RBP12.39□□□□□ -0.43
SMC1A-206ENST00000470241 SLFN13Q68D06 897 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 RUFY3Q7L099 469 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 RASGRP2Q7LDG7 609 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 ANKRD23Q86SG2 305 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 TBC1D32Q96NH3 1257 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 NUP88Q99567 741 aaPredicted RBP12.39□□□□□ -0.43
SMC1A-206ENST00000470241 CYP46A1Q9Y6A2 500 aa12.39□□□□□ -0.43
SMC1A-206ENST00000470241 WDR46O15213 610 aaKnown RBP12.38□□□□□ -0.43
SMC1A-206ENST00000470241 RAD21O60216 631 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 SNHG28P0DPA3 235 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 HOXA7P31268 230 aaPredicted RBP12.38□□□□□ -0.43
SMC1A-206ENST00000470241 LIFRP42702 1097 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 Q6ZUG5 572 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 FBXL16Q8N461 479 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 PNMA1Q8ND90 353 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 CHMP4CQ96CF2 233 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 AGXT2Q9BYV1 514 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 RPAP3Q9H6T3 665 aaPredicted RBP12.38□□□□□ -0.43
SMC1A-206ENST00000470241 KAT14Q9H8E8 782 aa12.38□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L15C9J2P7 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L13C9JLJ4 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L11C9JVI0 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L18D6R9N7 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L22D6RA61 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L17D6RBQ6 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L19D6RCP7 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L20D6RJB6 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 PDHXO00330 501 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 PDHBP11177 359 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 USP17L24Q0WX57 530 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 FAM83BQ5T0W9 1011 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 CATSPERGQ6ZRH7 1159 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 SGMS1Q86VZ5 419 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 DCAF4Q8WV16 495 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 ZCCHC17Q9NP64 241 aaKnown RBP12.37□□□□□ -0.43
SMC1A-206ENST00000470241 PDRG1Q9NUG6 133 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 MTMR7Q9Y216 660 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 SLC45A1Q9Y2W3 748 aa12.37□□□□□ -0.43
SMC1A-206ENST00000470241 LOC285556D6RIA3 1793 aa12.36□□□□□ -0.43
SMC1A-206ENST00000470241 CYP2C8P10632 490 aa12.36□□□□□ -0.43
SMC1A-206ENST00000470241 BMP3P12645 472 aa12.36□□□□□ -0.43
SMC1A-206ENST00000470241 SLC1A4P43007 532 aa12.36□□□□□ -0.43
SMC1A-206ENST00000470241 TROAPQ12815 778 aa12.36□□□□□ -0.43
SMC1A-206ENST00000470241 PABPC4Q13310 644 aaKnown RBP eCLIP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms