RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NT5C2P49902 561 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 ANAPC15P60006 121 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 SNAPC2Q13487 334 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 SH3D19Q5HYK7 790 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 IQCA1Q86XH1 822 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 MKL1Q969V6 931 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 CHMP4CQ96CF2 233 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 TBC1D32Q96NH3 1257 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 FEZ1Q99689 392 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 PTPN18Q99952 460 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 TMEM47Q9BQJ4 181 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 UBAC1Q9BSL1 405 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 KIAA1683Q9H0B3 1180 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 ARHGEF10LQ9HCE6 1279 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 ZSWIM6Q9HCJ5 1215 aa17.4■□□□□ 0.38
COL9A3-209ENST00000469852 CCL15-CCL14A0A0B4J2E2 113 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 SH2B2O14492 632 aaPredicted RBP17.39■□□□□ 0.37
COL9A3-209ENST00000469852 IFIT3O14879 490 aaKnown RBP17.39■□□□□ 0.37
COL9A3-209ENST00000469852 RPS6KB1P23443 525 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 GTF2A2P52657 109 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 NOGQ13253 232 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 CCL15Q16663 113 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 TREML2Q5T2D2 321 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 BLOC1S2Q6QNY1 142 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 DHX32Q7L7V1 743 aaKnown RBP17.39■□□□□ 0.37
COL9A3-209ENST00000469852 ANKS1AQ92625 1134 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 LY9Q9HBG7 655 aa17.39■□□□□ 0.37
COL9A3-209ENST00000469852 TESPA1A2RU30 521 aaPredicted RBP17.38■□□□□ 0.37
COL9A3-209ENST00000469852 IGF2BP3O00425 579 aaKnown RBP eCLIP17.38■□□□□ 0.37
COL9A3-209ENST00000469852 PSMA5P28066 241 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 TMEM67Q5HYA8 995 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 GPAT2Q6NUI2 795 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 GADL1Q6ZQY3 521 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 RUFY3Q7L099 469 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 DGKHQ86XP1 1220 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 SPICE1Q8N0Z3 855 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 TM6SF1Q9BZW5 370 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 VCPKMTQ9H867 229 aa17.38■□□□□ 0.37
COL9A3-209ENST00000469852 MANSC4A6NHS7 340 aaPredicted RBP17.37■□□□□ 0.37
COL9A3-209ENST00000469852 C19orf81C9J6K1 198 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 F5H6K3 240 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 TOP1P11387 765 aaKnown RBP17.37■□□□□ 0.37
COL9A3-209ENST00000469852 CETPP11597 493 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 KLRC3Q07444 240 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 USP17L2Q6R6M4 530 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 FAM43AQ8N2R8 423 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 C12orf42Q96LP6 360 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 TTC14Q96N46 770 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 NUP88Q99567 741 aaPredicted RBP17.37■□□□□ 0.37
COL9A3-209ENST00000469852 UPF2Q9HAU5 1272 aaKnown RBP17.37■□□□□ 0.37
COL9A3-209ENST00000469852 MTMR7Q9Y216 660 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 WDR19Q8NEZ3 1342 aa17.37■□□□□ 0.37
COL9A3-209ENST00000469852 PARP14Q460N5 1801 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 BTBD19C9JJ37 291 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 RAD21O60216 631 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 NDUFB10O96000 172 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 HMGB1P09429 215 aaKnown RBP17.36■□□□□ 0.37
COL9A3-209ENST00000469852 VCAM1P19320 739 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 WTAPQ15007 396 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 CCDC178Q5BJE1 867 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 IFIT1BQ5T764 474 aaKnown RBP17.36■□□□□ 0.37
COL9A3-209ENST00000469852 Q6ZUG5 572 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 PNMA1Q8ND90 353 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 TMEM87BQ96K49 555 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 SH2D4AQ9H788 454 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 CYP46A1Q9Y6A2 500 aa17.36■□□□□ 0.37
COL9A3-209ENST00000469852 RLFQ13129 1914 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 ERICH2A1L162 156 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 USP14P54578 494 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 PPP4R3BQ5MIZ7 849 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 PROCA1Q8NCQ7 364 aaPredicted RBP17.35■□□□□ 0.37
COL9A3-209ENST00000469852 GMCL1P1Q8NEA9 526 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 MTA3Q9BTC8 594 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 KAT14Q9H8E8 782 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 GOPCQ9HD26 462 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 TMOD4Q9NZQ9 345 aa17.35■□□□□ 0.37
COL9A3-209ENST00000469852 MAP2K2P36507 400 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 TM4SF4P48230 202 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 TOB2Q14106 344 aaPredicted RBP17.34■□□□□ 0.37
COL9A3-209ENST00000469852 SART3Q15020 963 aaKnown RBP17.34■□□□□ 0.37
COL9A3-209ENST00000469852 FAM83BQ5T0W9 1011 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 SLFN13Q68D06 897 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 FASTKD5Q7L8L6 764 aaKnown RBP17.34■□□□□ 0.37
COL9A3-209ENST00000469852 RAB11FIP4Q86YS3 637 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 IFNL1Q8IU54 200 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 MYL10Q9BUA6 226 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 AGXT2Q9BYV1 514 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 RPAP3Q9H6T3 665 aaPredicted RBP17.34■□□□□ 0.37
COL9A3-209ENST00000469852 BRPF3Q9ULD4 1205 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 SYNPO2Q9UMS6 1093 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 AGTPBP1Q9UPW5 1226 aa17.34■□□□□ 0.37
COL9A3-209ENST00000469852 PDHBP11177 359 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 LIFRP42702 1097 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 SREBF2Q12772 1141 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 ANKRD23Q86SG2 305 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 BRF1Q92994 677 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 ABHD8Q96I13 439 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 LARP6Q9BRS8 491 aaKnown RBP17.33■□□□□ 0.36
COL9A3-209ENST00000469852 PDRG1Q9NUG6 133 aa17.33■□□□□ 0.36
COL9A3-209ENST00000469852 FRMPD2Q68DX3 1309 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms