RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 MTUS1Q9ULD2 1270 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 DIS3Q9Y2L1 958 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 KIF1AQ12756 1690 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 KCNJ18B7U540 433 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 KIF1CO43896 1103 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 MAN1A1P33908 653 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 MAP3K9P80192 1104 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 TCIRG1Q13488 830 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 KCNJ12Q14500 433 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 HLTFQ14527 1009 aaKnown RBP eCLIP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 DZIP1Q86YF9 867 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 MAGEB6P1A0A0J9YX57 407 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 HMGB1P1B2RPK0 211 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 LUC7L3O95232 432 aaKnown RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 NBPF6Q5VWK0 638 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 PROM2Q8N271 834 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 SLC17A8Q8NDX2 589 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 DHX58Q96C10 678 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 NBPF4Q96M43 638 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 GRID2IPA4D2P6 1211 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 ERVV-1B6SEH8 477 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 G3V3G9 751 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 SH2B2O14492 632 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 PHKG2P15735 406 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 DCAF8Q5TAQ9 597 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 KMT5BQ4FZB7 885 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 ZBTB38Q8NAP3 1195 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-216ENST00000461872 FANCBQ8NB91 859 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 YY1AP1Q9H869 796 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 RIC8AQ9NPQ8 531 aa7.84□□□□□ -1.15
SYNE1-216ENST00000461872 SART1O43290 800 aaKnown RBP7.84□□□□□ -1.16
SYNE1-216ENST00000461872 C17orf53Q8N3J3 647 aaPredicted RBP7.84□□□□□ -1.16
SYNE1-216ENST00000461872 NFATC2IPQ8NCF5 419 aa7.84□□□□□ -1.16
SYNE1-216ENST00000461872 ENGASEQ8NFI3 743 aa7.84□□□□□ -1.16
SYNE1-216ENST00000461872 RRP15Q9Y3B9 282 aaKnown RBP7.84□□□□□ -1.16
SYNE1-216ENST00000461872 PCDHA5Q9Y5H7 936 aa7.84□□□□□ -1.16
SYNE1-216ENST00000461872 MFAP3LO75121 409 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 ATP6V1AP38606 617 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 DHX40Q8IX18 779 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 RRP36Q96EU6 259 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 JCADQ9P266 1359 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 TSPY2A6NKD2 308 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CPA1P15085 419 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CCZ1BP86790 482 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CCZ1P86791 482 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 MAP2K1Q02750 393 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 WDR93Q6P2C0 686 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC65Q8IXS2 484 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 DYDC1Q8WWB3 177 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 FANCLQ9NW38 375 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 LCMT1Q9UIC8 334 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 PRPF3O43395 683 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 ERCC3P19447 782 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 RASSF2P50749 326 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CSGALNACT2Q8N6G5 542 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 USHBP1Q8N6Y0 703 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 METTL14Q9HCE5 456 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 HAND2P61296 217 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 PLCB4Q15147 1175 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 C6orf163Q5TEZ5 329 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 ADAMTS13Q76LX8 1427 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 MOV10L1Q9BXT6 1211 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CSRNP2Q9H175 543 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 NSFL1CQ9UNZ2 370 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 TBCAO75347 108 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 FGAP02671 866 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 LRRC63Q05C16 580 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 SEPT7Q16181 437 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 SPECC1Q5M775 1068 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 APLFQ8IW19 511 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 FAM81BQ96LP2 452 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 MXD3Q9BW11 206 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 ADAM21Q9UKJ8 722 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 FAM237AA0A1B0GTK4 181 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 H7C1W4 665 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CDK17Q00537 523 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 A0A1B0GTH6 734 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 GKAP1Q5VSY0 366 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CAPS2Q9BXY5 557 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 GCFC2P16383 781 aaKnown RBP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 MORC3Q14149 939 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 UBL4BQ8N7F7 174 aa7.83□□□□□ -1.16
SYNE1-216ENST00000461872 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.83□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC169A6NNP5 214 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC188H7C350 402 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 ABCD1P33897 745 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 KCNB1Q14721 858 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CDC37Q16543 378 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF658Q5TYW1 1059 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 NOC4LQ9BVI4 516 aaKnown RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 MINDY4BA8MYZ0 360 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 RGL2O15211 777 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 EVI5O60447 810 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 PDE6AP16499 860 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CUL5Q93034 780 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF496Q96IT1 587 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 FBLN1P23142 703 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 PTPN12Q05209 780 aaKnown RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 PGBD1Q96JS3 809 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms