RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 IQCA1Q86XH1 822 aa13.28□□□□□ -0.28
SSBP1-202ENST00000461433 PROCA1Q8NCQ7 364 aaPredicted RBP13.28□□□□□ -0.28
SSBP1-202ENST00000461433 JAKMIP1Q96N16 626 aaKnown RBP13.28□□□□□ -0.28
SSBP1-202ENST00000461433 TMEM47Q9BQJ4 181 aa13.28□□□□□ -0.28
SSBP1-202ENST00000461433 SENP2Q9HC62 589 aa13.28□□□□□ -0.28
SSBP1-202ENST00000461433 TNKSO95271 1327 aa13.27□□□□□ -0.28
SSBP1-202ENST00000461433 PCNTO95613 3336 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 BTBD19C9JJ37 291 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 PRC1O43663 620 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 USP14P54578 494 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 ANAPC15P60006 121 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 TREML2Q5T2D2 321 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 DHX32Q7L7V1 743 aaKnown RBP13.27□□□□□ -0.29
SSBP1-202ENST00000461433 FASTKD5Q7L8L6 764 aaKnown RBP13.27□□□□□ -0.29
SSBP1-202ENST00000461433 IFNL1Q8IU54 200 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 LRRC47Q8N1G4 583 aaKnown RBP13.27□□□□□ -0.29
SSBP1-202ENST00000461433 FAM43AQ8N2R8 423 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 FEZ1Q99689 392 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 VCPKMTQ9H867 229 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 GPHNQ9NQX3 736 aaPredicted RBP13.27□□□□□ -0.29
SSBP1-202ENST00000461433 SYNPO2Q9UMS6 1093 aa13.27□□□□□ -0.29
SSBP1-202ENST00000461433 F5H6K3 240 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
SSBP1-202ENST00000461433 RBM25P49756 843 aaKnown RBP13.26□□□□□ -0.29
SSBP1-202ENST00000461433 KLRC3Q07444 240 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 SREBF2Q12772 1141 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 MAPK8IP2Q13387 824 aaPredicted RBP13.26□□□□□ -0.29
SSBP1-202ENST00000461433 CCDC178Q5BJE1 867 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 PPP4R3BQ5MIZ7 849 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 GADL1Q6ZQY3 521 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 ANKRD23Q86SG2 305 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 REM2Q8IYK8 340 aaPredicted RBP13.26□□□□□ -0.29
SSBP1-202ENST00000461433 GMCL1P1Q8NEA9 526 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 TCEANC2Q96MN5 208 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 KIF2CQ99661 725 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 UBAC1Q9BSL1 405 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 MTA3Q9BTC8 594 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 TM6SF1Q9BZW5 370 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 SH2D4AQ9H788 454 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 ZSWIM6Q9HCJ5 1215 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 RLFQ13129 1914 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 WDR19Q8NEZ3 1342 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 PARP14Q460N5 1801 aa13.26□□□□□ -0.29
SSBP1-202ENST00000461433 IFIT3O14879 490 aaKnown RBP13.25□□□□□ -0.29
SSBP1-202ENST00000461433 HMGB1P09429 215 aaKnown RBP13.25□□□□□ -0.29
SSBP1-202ENST00000461433 VCAM1P19320 739 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 CASTP20810 708 aaKnown RBP13.25□□□□□ -0.29
SSBP1-202ENST00000461433 SPICE1Q8N0Z3 855 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 JMYQ8N9B5 988 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 LRRC2Q9BYS8 371 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 C22orf23Q9BZE7 217 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 LY9Q9HBG7 655 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 TMOD4Q9NZQ9 345 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 AGTPBP1Q9UPW5 1226 aa13.25□□□□□ -0.29
SSBP1-202ENST00000461433 SH2B2O14492 632 aaPredicted RBP13.24□□□□□ -0.29
SSBP1-202ENST00000461433 NDUFB10O96000 172 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 RPS6KB1P23443 525 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 PSMA5P28066 241 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 HOXA7P31268 230 aaPredicted RBP13.24□□□□□ -0.29
SSBP1-202ENST00000461433 TMEM67Q5HYA8 995 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 BLOC1S2Q6QNY1 142 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 RUFY3Q7L099 469 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 RASGRP2Q7LDG7 609 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 LPAR1Q92633 364 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 TMEM87BQ96K49 555 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 GOPCQ9HD26 462 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 PDHXO00330 501 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 IFIT1BQ5T764 474 aaKnown RBP13.24□□□□□ -0.29
SSBP1-202ENST00000461433 NUP88Q99567 741 aaPredicted RBP13.24□□□□□ -0.29
SSBP1-202ENST00000461433 ZCCHC17Q9NP64 241 aaKnown RBP13.24□□□□□ -0.29
SSBP1-202ENST00000461433 SLC45A1Q9Y2W3 748 aa13.24□□□□□ -0.29
SSBP1-202ENST00000461433 WDR46O15213 610 aaKnown RBP13.23□□□□□ -0.29
SSBP1-202ENST00000461433 SNHG28P0DPA3 235 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 LIFRP42702 1097 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 WTAPQ15007 396 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 SART3Q15020 963 aaKnown RBP13.23□□□□□ -0.29
SSBP1-202ENST00000461433 SLFN13Q68D06 897 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 CATSPERGQ6ZRH7 1159 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 FBXL16Q8N461 479 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 PNMA1Q8ND90 353 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 GMCL1Q96IK5 515 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 AGXT2Q9BYV1 514 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 UPF3BQ9BZI7 483 aaKnown RBP13.23□□□□□ -0.29
SSBP1-202ENST00000461433 RPAP3Q9H6T3 665 aaPredicted RBP13.23□□□□□ -0.29
SSBP1-202ENST00000461433 RNF186Q9NXI6 227 aa13.23□□□□□ -0.29
SSBP1-202ENST00000461433 ERICH2A1L162 156 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 PDHBP11177 359 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 FAM83BQ5T0W9 1011 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 POTEEQ6S8J3 1075 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 SGMS1Q86VZ5 419 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 TBC1D32Q96NH3 1257 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 ASCC2Q9H1I8 757 aaPredicted RBP13.22□□□□□ -0.29
SSBP1-202ENST00000461433 RNF39Q9H2S5 420 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 KAT14Q9H8E8 782 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 WBP1LQ9NX94 342 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 CYP46A1Q9Y6A2 500 aa13.22□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L15C9J2P7 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L13C9JLJ4 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L11C9JVI0 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L18D6R9N7 530 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms