RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 GOPCQ9HD26 462 aa11.93□□□□□ -0.5
UPF2-204ENST00000460569 MTMR7Q9Y216 660 aa11.93□□□□□ -0.5
UPF2-204ENST00000460569 TMX2Q9Y320 296 aa11.93□□□□□ -0.5
UPF2-204ENST00000460569 RASSF10A6NK89 507 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 ZBTB48P10074 688 aaPredicted RBP11.92□□□□□ -0.5
UPF2-204ENST00000460569 LIFRP42702 1097 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 USP14P54578 494 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 HMGCS2P54868 508 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 BACE1P56817 501 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 HTRA3P83110 453 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 TOB2Q14106 344 aaPredicted RBP11.92□□□□□ -0.5
UPF2-204ENST00000460569 DEFB115Q30KQ5 88 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 CYP4F22Q6NT55 531 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 USP17L2Q6R6M4 530 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 NOL8Q76FK4 1167 aaKnown RBP11.92□□□□□ -0.5
UPF2-204ENST00000460569 ANKS1AQ92625 1134 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 MKL1Q969V6 931 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 CCDC102AQ96A19 550 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 CHMP4CQ96CF2 233 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 VCPKMTQ9H867 229 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 TMOD4Q9NZQ9 345 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 NAP1L2Q9ULW6 460 aaPredicted RBP11.92□□□□□ -0.5
UPF2-204ENST00000460569 SYNPO2Q9UMS6 1093 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 KCNH4Q9UQ05 1017 aa11.92□□□□□ -0.5
UPF2-204ENST00000460569 KLF18A0A0U1RQI7 1052 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 C19orf81C9J6K1 198 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 CXCL11O14625 94 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 ST18O60284 1047 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 HSPA6P17066 643 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 GTF2A2P52657 109 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 AK2P54819 239 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 APOBRQ0VD83 1088 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 SNAPC2Q13487 334 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 DGKZQ13574 1117 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 GADL1Q6ZQY3 521 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 RASGRP2Q7LDG7 609 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 CATIPQ7Z7H3 387 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 SGMS1Q86VZ5 419 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 ZNF654Q8IZM8 581 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 SPICE1Q8N0Z3 855 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 TMTC2Q8N394 836 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 MYL10Q9BUA6 226 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 AGXT2Q9BYV1 514 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 ISY1Q9ULR0 285 aaKnown RBP11.91□□□□□ -0.5
UPF2-204ENST00000460569 SLC12A7Q9Y666 1083 aa11.91□□□□□ -0.5
UPF2-204ENST00000460569 PARP14Q460N5 1801 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 THSD7BQ9C0I4 1608 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 CCL15-CCL14A0A0B4J2E2 113 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 A0A0G2JLL6 359 aaPredicted RBP11.9□□□□□ -0.5
UPF2-204ENST00000460569 GOLGA8BA8MQT2 603 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 FAM155AB1AL88 458 aaPredicted RBP11.9□□□□□ -0.5
UPF2-204ENST00000460569 F5H6K3 240 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 DDAH1O94760 285 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 NDUFB10O96000 172 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 CETPP11597 493 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 KLRC3Q07444 240 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 ANKRD1Q15327 319 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 CCL15Q16663 113 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 CCDC96Q2M329 555 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 SH3D19Q5HYK7 790 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 KIAA1755Q5JYT7 1200 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 SLFN13Q68D06 897 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 APOA5Q6Q788 366 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 SYNE3Q6ZMZ3 975 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 PRRT2Q7Z6L0 340 aaPredicted RBP11.9□□□□□ -0.5
UPF2-204ENST00000460569 MICU3Q86XE3 530 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 RAB11FIP4Q86YS3 637 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 FBXL16Q8N461 479 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 GMCL1P1Q8NEA9 526 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 NUP133Q8WUM0 1156 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 LPAR1Q92633 364 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 CAPNS2Q96L46 248 aa11.9□□□□□ -0.5
UPF2-204ENST00000460569 LARP6Q9BRS8 491 aaKnown RBP11.9□□□□□ -0.5
UPF2-204ENST00000460569 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
UPF2-204ENST00000460569 WDR46O15213 610 aaKnown RBP11.89□□□□□ -0.51
UPF2-204ENST00000460569 PDHBP11177 359 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 VCAM1P19320 739 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 RXRAP19793 462 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 SLC1A4P43007 532 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 PROCA1Q8NCQ7 364 aaPredicted RBP11.89□□□□□ -0.51
UPF2-204ENST00000460569 C12orf42Q96LP6 360 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 NUP88Q99567 741 aaPredicted RBP11.89□□□□□ -0.51
UPF2-204ENST00000460569 EMILIN3Q9NT22 766 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 BRPF3Q9ULD4 1205 aa11.89□□□□□ -0.51
UPF2-204ENST00000460569 FRMPD2Q68DX3 1309 aaPredicted RBP11.88□□□□□ -0.51
UPF2-204ENST00000460569 MANSC4A6NHS7 340 aaPredicted RBP11.88□□□□□ -0.51
UPF2-204ENST00000460569 GOLGA8AA7E2F4 631 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 ZBTB43O43298 467 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 CALM1P0DP23 149 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 CALM2P0DP24 149 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 CALM3P0DP25 149 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 BMP3P12645 472 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 TROAPQ12815 778 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 NOGQ13253 232 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 FAM83BQ5T0W9 1011 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 FASTKD5Q7L8L6 764 aaKnown RBP11.88□□□□□ -0.51
UPF2-204ENST00000460569 CCDC144CPQ8IYA2 1237 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 IL27Q8NEV9 243 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 CTCFLQ8NI51 663 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms