RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 BECN1Q14457 450 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 SEC23AQ15436 765 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 GPATCH4Q5T3I0 446 aaKnown RBP14.42□□□□□ -0.1
HDAC4-206ENST00000460235 DCAF4Q8WV16 495 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 BRF1Q92994 677 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 OTUD5Q96G74 571 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 TMEM47Q9BQJ4 181 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.42□□□□□ -0.1
HDAC4-206ENST00000460235 LY9Q9HBG7 655 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 RBM28Q9NW13 759 aaKnown RBP14.42□□□□□ -0.1
HDAC4-206ENST00000460235 AFG3L2Q9Y4W6 797 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 TACC3Q9Y6A5 838 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 SIPA1L1O43166 1804 aa14.42□□□□□ -0.1
HDAC4-206ENST00000460235 MANSC4A6NHS7 340 aaPredicted RBP14.41□□□□□ -0.1
HDAC4-206ENST00000460235 TRIM75PA6NK02 468 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 RAD21O60216 631 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 GUCY1A2P33402 732 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 ANP32AP39687 249 aaKnown RBP14.41□□□□□ -0.1
HDAC4-206ENST00000460235 SLC1A4P43007 532 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 EVCP57679 992 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 RRP1BQ14684 758 aaKnown RBP14.41□□□□□ -0.1
HDAC4-206ENST00000460235 DEFB115Q30KQ5 88 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 ASPRV1Q53RT3 343 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 PAXIP1Q6ZW49 1069 aaPredicted RBP14.41□□□□□ -0.1
HDAC4-206ENST00000460235 MOB2Q70IA6 237 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 HSCBQ8IWL3 235 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 PROCA1Q8NCQ7 364 aaPredicted RBP14.41□□□□□ -0.1
HDAC4-206ENST00000460235 WNK4Q96J92 1243 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 KIF2CQ99661 725 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 VCPKMTQ9H867 229 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 KCNH4Q9UQ05 1017 aa14.41□□□□□ -0.1
HDAC4-206ENST00000460235 DOCK1Q14185 1865 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 KLF18A0A0U1RQI7 1052 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 F5H6K3 240 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 WDR46O15213 610 aaKnown RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 NMT2O60551 498 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 CDKL5O76039 1030 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 PARP1P09874 1014 aaKnown RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SLURP2P0DP57 97 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 FDX1P10109 184 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 FMR1Q06787 632 aaKnown RBP eCLIP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 KLRC3Q07444 240 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SREBF2Q12772 1141 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 TRAF1Q13077 416 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SH3D19Q5HYK7 790 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SPRYD7Q5W111 196 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SLFN13Q68D06 897 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 ZNF654Q8IZM8 581 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 CHURC1Q8WUH1 139 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 GMCL1Q96IK5 515 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 CLMNQ96JQ2 1002 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 C12orf42Q96LP6 360 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 SLKQ9H2G2 1235 aaPredicted RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 DAXXQ9UER7 740 aaPredicted RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 PNMA2Q9UL42 364 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 ISY1Q9ULR0 285 aaKnown RBP14.4□□□□□ -0.1
HDAC4-206ENST00000460235 FZD1Q9UP38 647 aa14.4□□□□□ -0.1
HDAC4-206ENST00000460235 CPLX1O14810 134 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 IRF6O14896 467 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 CPA1P15085 419 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 AK2P54819 239 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 NOGQ13253 232 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 MTMR2Q13614 643 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 APOA5Q6Q788 366 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 FAM160B2Q86V87 743 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 NUP133Q8WUM0 1156 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 SNX21Q969T3 373 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 TCEANC2Q96MN5 208 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 LRRC2Q9BYS8 371 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 RBM27Q9P2N5 1060 aaKnown RBP14.39□□□□□ -0.11
HDAC4-206ENST00000460235 PNMA3Q9UL41 463 aa14.39□□□□□ -0.11
HDAC4-206ENST00000460235 A0A0G2JLL6 359 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 RASSF10A6NK89 507 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 GOLGA8BA8MQT2 603 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 SLC10A3P09131 477 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 BMP3P12645 472 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 OSBPP22059 807 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 SMARCA1P28370 1054 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 METAP2P50579 478 aaKnown RBP eCLIP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 IKQ13123 557 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 RTN1Q16799 776 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 CCDC96Q2M329 555 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 PRRT2Q7Z6L0 340 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 LRRC47Q8N1G4 583 aaKnown RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 FANCBQ8NB91 859 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 ACER1Q8TDN7 264 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 GTF3C2Q8WUA4 911 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 ZCCHC17Q9NP64 241 aaKnown RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 HOXC10Q9NYD6 342 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 FEM1BQ9UK73 627 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 SLC45A1Q9Y2W3 748 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 KIF3AQ9Y496 699 aa14.38□□□□□ -0.11
HDAC4-206ENST00000460235 CTDP1Q9Y5B0 961 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-206ENST00000460235 GOLGA8AA7E2F4 631 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L15C9J2P7 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L13C9JLJ4 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L11C9JVI0 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L18D6R9N7 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L22D6RA61 530 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms