RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SMIM22K7EJ46 135 aa21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 GLRX3O76003 335 aaKnown RBP21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 FARP2O94887 1054 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 CAPN2P17655 700 aa21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 POTEEQ6S8J3 1075 aa21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 OSBP2Q969R2 916 aa21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.52■■□□□ 1.045e-9■■■■□ 21.6
SQSTM1-204ENST00000453046 HMX1Q9NP08 348 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 PAK6Q9NQU5 681 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 BAZ2AQ9UIF9 1905 aaKnown RBP21.52■■□□□ 1.04
SQSTM1-204ENST00000453046 SALL3Q9BXA9 1300 aa21.52■■□□□ 1.03
SQSTM1-204ENST00000453046 CNMDO75829 334 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 XRCC5P13010 732 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 RGS2P41220 211 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 ATP2B2Q01814 1243 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 COG2Q14746 738 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 LBX2Q6XYB7 198 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 TRMT44Q8IYL2 757 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 TRIB2Q92519 343 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 HOXC10Q9NYD6 342 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 RPTORQ8N122 1335 aa21.51■■□□□ 1.03
SQSTM1-204ENST00000453046 SPDYE16A6NNV3 312 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 SLC34A2O95436 690 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 APPP05067 770 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 ZKSCAN1P17029 563 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 GNAT2P19087 354 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 TRIM32Q13049 653 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 CLEC10AQ8IUN9 316 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 LPAR1Q92633 364 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 IVNS1ABPQ9Y6Y0 642 aa21.5■■□□□ 1.03
SQSTM1-204ENST00000453046 GSG1L2A8MUP6 293 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 MINDY4BA8MYZ0 360 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 GPAA1O43292 621 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 MX1P20591 662 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 TDO2P48775 406 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 GIMAP6Q6P9H5 292 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 SPICE1Q8N0Z3 855 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 STK11IPQ8N1F8 1099 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 OTUD7AQ8TE49 926 aaPredicted RBP21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 FSD1Q9BTV5 496 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 KANSL2Q9H9L4 492 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 MKNK2Q9HBH9 465 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 BTBD7Q9P203 1132 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 TMX2Q9Y320 296 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 MYH8P13535 1937 aa21.49■■□□□ 1.03
SQSTM1-204ENST00000453046 SBK1Q52WX2 424 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 MORN1Q5T089 497 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 UBE2Q1Q7Z7E8 422 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 PLEKHM2Q8IWE5 1019 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 PI4K2BQ8TCG2 481 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 APBA2Q99767 749 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 VCPKMTQ9H867 229 aa21.48■■□□□ 1.03
SQSTM1-204ENST00000453046 RAD21O60216 631 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 FLOT1O75955 427 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 EEF2P13639 858 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 PRKAR2AP13861 404 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 MAP2K5Q13163 448 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 SAMD1Q6SPF0 538 aaPredicted RBP21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 SIAH1Q8IUQ4 282 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 USP6NLQ92738 828 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 OSBPL3Q9H4L5 887 aa21.47■■□□□ 1.03
SQSTM1-204ENST00000453046 PLXNB2O15031 1838 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 SLC15A5A6NIM6 579 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 H0YGN5 161 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 M0R2C6 588 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 KIAA1755Q5JYT7 1200 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 CRISPLD2Q9H0B8 497 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 STAP2Q9UGK3 403 aa21.46■■□□□ 1.03
SQSTM1-204ENST00000453046 PATL2C9JE40 543 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 WDR46O15213 610 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 PTPREP23469 700 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 DSG3P32926 999 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 PDE1AP54750 535 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 PLS1Q14651 629 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 CCL14Q16627 93 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 MB21D1Q8N884 522 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 NACAP1Q9BZK3 213 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 ZNF287Q9HBT7 754 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 GOPCQ9HD26 462 aa21.45■■□□□ 1.02
SQSTM1-204ENST00000453046 CACNB2Q08289 660 aaPredicted RBP21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 BMP2KLQ5H9B9 411 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 HABP4Q5JVS0 413 aaKnown RBP21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 MAP3K21Q5TCX8 1036 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 NECAB2Q7Z6G3 386 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 ANKLE1Q8NAG6 615 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 PAWRQ96IZ0 340 aaKnown RBP21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 MOV10L1Q9BXT6 1211 aaKnown RBP21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 SPATC1LQ9H0A9 340 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 EPB41L4AQ9HCS5 686 aaPredicted RBP21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 NR2E3Q9Y5X4 410 aa21.44■■□□□ 1.02
SQSTM1-204ENST00000453046 RASA1P20936 1047 aa21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 MFSD14CQ5VZR4 134 aa21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 IFNL3Q8IZI9 196 aa21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 ZNF444Q8N0Y2 327 aaPredicted RBP21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 ATG4CQ96DT6 458 aa21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 SEC62Q99442 399 aaKnown RBP21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 CEP290O15078 2479 aa21.43■■□□□ 1.02
SQSTM1-204ENST00000453046 GRB14Q14449 540 aa21.42■■□□□ 1.02
SQSTM1-204ENST00000453046 TTC22Q5TAA0 569 aa21.42■■□□□ 1.02
SQSTM1-204ENST00000453046 DPP9Q86TI2 863 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms