RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 GIMAP6Q6P9H5 292 aa24.89■■□□□ 1.58
SDC1-205ENST00000447124 SOCS4Q8WXH5 440 aa24.89■■□□□ 1.58
SDC1-205ENST00000447124 EPB41L4AQ9HCS5 686 aaPredicted RBP24.89■■□□□ 1.58
SDC1-205ENST00000447124 HOXC10Q9NYD6 342 aa24.89■■□□□ 1.58
SDC1-205ENST00000447124 ARPP21Q9UBL0 812 aaPredicted RBP24.89■■□□□ 1.58
SDC1-205ENST00000447124 RPTORQ8N122 1335 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 ERC2O15083 957 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 FARP2O94887 1054 aaPredicted RBP24.88■■□□□ 1.57
SDC1-205ENST00000447124 EEF2P13639 858 aaKnown RBP24.88■■□□□ 1.57
SDC1-205ENST00000447124 CCL14Q16627 93 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 MAP3K21Q5TCX8 1036 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 SPICE1Q8N0Z3 855 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 STK11IPQ8N1F8 1099 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 VCPKMTQ9H867 229 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 ARHGEF10LQ9HCE6 1279 aa24.88■■□□□ 1.57
SDC1-205ENST00000447124 MINDY4BA8MYZ0 360 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 H0YGN5 161 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 MX1P20591 662 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 CCNA1P78396 465 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 HDAC1Q13547 482 aaPredicted RBP24.87■■□□□ 1.57
SDC1-205ENST00000447124 DPF3Q92784 378 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 TANGO6Q9C0B7 1094 aa24.87■■□□□ 1.57
SDC1-205ENST00000447124 HMX1Q9NP08 348 aaPredicted RBP24.87■■□□□ 1.57
SDC1-205ENST00000447124 PATL2C9JE40 543 aaKnown RBP24.86■■□□□ 1.57
SDC1-205ENST00000447124 RASA1P20936 1047 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 PTPREP23469 700 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 DSG3P32926 999 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 RGS2P41220 211 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 MAP2K5Q13163 448 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 KANSL2Q9H9L4 492 aa24.86■■□□□ 1.57
SDC1-205ENST00000447124 CACNB2Q08289 660 aaPredicted RBP24.85■■□□□ 1.57
SDC1-205ENST00000447124 LPAR1Q92633 364 aa24.85■■□□□ 1.57
SDC1-205ENST00000447124 MOV10L1Q9BXT6 1211 aaKnown RBP24.85■■□□□ 1.57
SDC1-205ENST00000447124 SLC15A5A6NIM6 579 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 PRKAR2AP13861 404 aaKnown RBP24.84■■□□□ 1.57
SDC1-205ENST00000447124 CAPN2P17655 700 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 GNAT2P19087 354 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 MNX1P50219 401 aaPredicted RBP24.84■■□□□ 1.57
SDC1-205ENST00000447124 ATP2B2Q01814 1243 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 ZMYM1Q5SVZ6 1142 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 WDR78Q5VTH9 848 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 IFNL3Q8IZI9 196 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 FSD1Q9BTV5 496 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 FLRT1Q9NZU1 646 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 RLFQ13129 1914 aa24.84■■□□□ 1.57
SDC1-205ENST00000447124 APPP05067 770 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 ZKSCAN1P17029 563 aaPredicted RBP24.83■■□□□ 1.57
SDC1-205ENST00000447124 TRMT44Q8IYL2 757 aaKnown RBP24.83■■□□□ 1.57
SDC1-205ENST00000447124 DIS3LQ8TF46 1054 aaKnown RBP24.83■■□□□ 1.57
SDC1-205ENST00000447124 GCC1Q96CN9 775 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 ATG4CQ96DT6 458 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 PAWRQ96IZ0 340 aaKnown RBP24.83■■□□□ 1.57
SDC1-205ENST00000447124 APBA2Q99767 749 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 SH2D4AQ9H788 454 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 CWC22Q9HCG8 908 aaKnown RBP24.83■■□□□ 1.57
SDC1-205ENST00000447124 STAP2Q9UGK3 403 aa24.83■■□□□ 1.57
SDC1-205ENST00000447124 WDR46O15213 610 aaKnown RBP24.82■■□□□ 1.56
SDC1-205ENST00000447124 FLOT1O75955 427 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 GRB14Q14449 540 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 LRRFIP1Q32MZ4 808 aaKnown RBP24.82■■□□□ 1.56
SDC1-205ENST00000447124 HABP4Q5JVS0 413 aaKnown RBP24.82■■□□□ 1.56
SDC1-205ENST00000447124 NPLOC4Q8TAT6 608 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 HTATIP2Q9BUP3 242 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 SPATC1LQ9H0A9 340 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 MKNK2Q9HBH9 465 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 MYH8P13535 1937 aa24.82■■□□□ 1.56
SDC1-205ENST00000447124 CCND3P30281 292 aaPredicted RBP24.81■■□□□ 1.56
SDC1-205ENST00000447124 TDO2P48775 406 aa24.81■■□□□ 1.56
SDC1-205ENST00000447124 FBXO28Q9NVF7 368 aa24.81■■□□□ 1.56
SDC1-205ENST00000447124 OGDHLQ9ULD0 1010 aa24.81■■□□□ 1.56
SDC1-205ENST00000447124 ADAMTS5Q9UNA0 930 aa24.81■■□□□ 1.56
SDC1-205ENST00000447124 COLQQ9Y215 455 aaPredicted RBP24.81■■□□□ 1.56
SDC1-205ENST00000447124 ROBO3Q96MS0 1386 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 IGKV6D-41A0A0C4DH26 115 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 PRDM1O75626 825 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 HOXC6P09630 235 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 ERCC3P19447 782 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 PDE1AP54750 535 aa24.8■■□□□ 1.56
SDC1-205ENST00000447124 FOXP2O15409 715 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 IGHA2P01877 340 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 LHX8Q68G74 356 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 SAMD1Q6SPF0 538 aaPredicted RBP24.79■■□□□ 1.56
SDC1-205ENST00000447124 CCDC129Q6ZRS4 1044 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 MB21D1Q8N884 522 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 SHCBP1Q8NEM2 672 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 NYAP2Q9P242 653 aa24.79■■□□□ 1.56
SDC1-205ENST00000447124 TMEM132BQ14DG7 1078 aa24.78■■□□□ 1.56
SDC1-205ENST00000447124 ANKLE1Q8NAG6 615 aa24.78■■□□□ 1.56
SDC1-205ENST00000447124 ZBTB47Q9UFB7 747 aaPredicted RBP24.78■■□□□ 1.56
SDC1-205ENST00000447124 IVNS1ABPQ9Y6Y0 642 aa24.78■■□□□ 1.56
SDC1-205ENST00000447124 COBLO75128 1261 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 IGHDP01880 384 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 PLS1Q14651 629 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 FAM83BQ5T0W9 1011 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 NECAB2Q7Z6G3 386 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 ZNF444Q8N0Y2 327 aaPredicted RBP24.77■■□□□ 1.56
SDC1-205ENST00000447124 GOPCQ9HD26 462 aa24.77■■□□□ 1.56
SDC1-205ENST00000447124 F5H6K3 240 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 STRNO43815 780 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 RAD21O60216 631 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms