RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 C1QTNF8P60827 252 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 ANKRD1Q15327 319 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 DEFB115Q30KQ5 88 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 NFXL1Q6ZNB6 911 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 RASAL3Q86YV0 1011 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 AGXT2Q9BYV1 514 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 GOPCQ9HD26 462 aa18.5■□□□□ 0.55
USP40-206ENST00000443711 RASSF10A6NK89 507 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 SLC10A3P09131 477 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 GJA5P36382 358 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 SNAPC2Q13487 334 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 MTMR2Q13614 643 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 USP17L2Q6R6M4 530 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 PAXIP1Q6ZW49 1069 aaPredicted RBP18.49■□□□□ 0.55
USP40-206ENST00000443711 LRRC47Q8N1G4 583 aaKnown RBP18.49■□□□□ 0.55
USP40-206ENST00000443711 PNMA1Q8ND90 353 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 BRF1Q92994 677 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 SENP2Q9HC62 589 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 PTPRFP10586 1907 aa18.49■□□□□ 0.55
USP40-206ENST00000443711 ST18O60284 1047 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 TOB2Q14106 344 aaPredicted RBP18.48■□□□□ 0.55
USP40-206ENST00000443711 ZYXQ15942 572 aaKnown RBP18.48■□□□□ 0.55
USP40-206ENST00000443711 SH3D19Q5HYK7 790 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 SYNE3Q6ZMZ3 975 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 CATIPQ7Z7H3 387 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 SGMS1Q86VZ5 419 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 GMCL1P1Q8NEA9 526 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 VCPKMTQ9H867 229 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 TMOD4Q9NZQ9 345 aa18.48■□□□□ 0.55
USP40-206ENST00000443711 F5H6K3 240 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 RAD21O60216 631 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 GTF2A2P52657 109 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 AK2P54819 239 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 HMGCS2P54868 508 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 KLRC3Q07444 240 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 MKRN3Q13064 507 aaKnown RBP18.47■□□□□ 0.55
USP40-206ENST00000443711 EMILIN3Q9NT22 766 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 SLC12A7Q9Y666 1083 aa18.47■□□□□ 0.55
USP40-206ENST00000443711 A0A0G2JLL6 359 aaPredicted RBP18.46■□□□□ 0.55
USP40-206ENST00000443711 KLF18A0A0U1RQI7 1052 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 CETPP11597 493 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 HSPA6P17066 643 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 APOBRQ0VD83 1088 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 SLFN13Q68D06 897 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 CYP4F22Q6NT55 531 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 PRRT2Q7Z6L0 340 aaPredicted RBP18.46■□□□□ 0.55
USP40-206ENST00000443711 ZNF654Q8IZM8 581 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 LPAR1Q92633 364 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 C12orf42Q96LP6 360 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 BRPF3Q9ULD4 1205 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 MTMR7Q9Y216 660 aa18.46■□□□□ 0.55
USP40-206ENST00000443711 MANSC4A6NHS7 340 aaPredicted RBP18.45■□□□□ 0.54
USP40-206ENST00000443711 FAM155AB1AL88 458 aaPredicted RBP18.45■□□□□ 0.54
USP40-206ENST00000443711 DDAH1O94760 285 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 NDUFB10O96000 172 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 CALM1P0DP23 149 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 CALM2P0DP24 149 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 CALM3P0DP25 149 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 EVCP57679 992 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 APOA5Q6Q788 366 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 GADL1Q6ZQY3 521 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 FASTKD5Q7L8L6 764 aaKnown RBP18.45■□□□□ 0.54
USP40-206ENST00000443711 PROCA1Q8NCQ7 364 aaPredicted RBP18.45■□□□□ 0.54
USP40-206ENST00000443711 DCAF4Q8WV16 495 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 MS4A4AQ96JQ5 239 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 CAPNS2Q96L46 248 aa18.45■□□□□ 0.54
USP40-206ENST00000443711 NAP1L2Q9ULW6 460 aaPredicted RBP18.45■□□□□ 0.54
USP40-206ENST00000443711 ZBTB43O43298 467 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 GRM1Q13255 1194 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 KIAA1755Q5JYT7 1200 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 SPICE1Q8N0Z3 855 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 ZNF274Q96GC6 653 aaPredicted RBP18.44■□□□□ 0.54
USP40-206ENST00000443711 GMCL1Q96IK5 515 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 MAP3K14Q99558 947 aa18.44■□□□□ 0.54
USP40-206ENST00000443711 CCL15-CCL14A0A0B4J2E2 113 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 WDR46O15213 610 aaKnown RBP18.43■□□□□ 0.54
USP40-206ENST00000443711 BMP3P12645 472 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 SLC1A4P43007 532 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 RCAN1P53805 252 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 INHBEP58166 350 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 TROAPQ12815 778 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 NOGQ13253 232 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 CCL15Q16663 113 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 NUP133Q8WUM0 1156 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 LIMCH1Q9UPQ0 1083 aa18.43■□□□□ 0.54
USP40-206ENST00000443711 LOC285556D6RIA3 1793 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 SNHG28P0DPA3 235 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 PDHBP11177 359 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 VCAM1P19320 739 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 PDIA3P30101 505 aaKnown RBP18.42■□□□□ 0.54
USP40-206ENST00000443711 MCM2P49736 904 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 HTRA3P83110 453 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 DGKZQ13574 1117 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 MOGSQ13724 837 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 NOL8Q76FK4 1167 aaKnown RBP18.42■□□□□ 0.54
USP40-206ENST00000443711 CTCFLQ8NI51 663 aaPredicted RBP18.42■□□□□ 0.54
USP40-206ENST00000443711 CHMP4CQ96CF2 233 aa18.42■□□□□ 0.54
USP40-206ENST00000443711 ZSCAN31Q96LW9 406 aaPredicted RBP18.42■□□□□ 0.54
USP40-206ENST00000443711 LARP6Q9BRS8 491 aaKnown RBP18.42■□□□□ 0.54
USP40-206ENST00000443711 MYL10Q9BUA6 226 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms