RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SLC5A4Q9NY91 659 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 TLR7Q9NYK1 1049 aaKnown RBP9.37□□□□□ -0.91
CD44-211ENST00000442151 IVNS1ABPQ9Y6Y0 642 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 APBB1O00213 710 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 GDF11O95390 407 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 UBE3CQ15386 1083 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 HABP4Q5JVS0 413 aaKnown RBP9.36□□□□□ -0.91
CD44-211ENST00000442151 TMEM179Q6ZVK1 233 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 NECAB2Q7Z6G3 386 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 PLEKHH3Q7Z736 793 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 ADGRA1Q86SQ6 560 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 CCDC84Q86UT8 332 aaPredicted RBP9.36□□□□□ -0.91
CD44-211ENST00000442151 ZNF287Q9HBT7 754 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 ARHGEF10LQ9HCE6 1279 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 ZNF532Q9HCE3 1301 aa9.36□□□□□ -0.91
CD44-211ENST00000442151 MPHOSPH10O00566 681 aaKnown RBP9.35□□□□□ -0.91
CD44-211ENST00000442151 ERVK-9P63128 1117 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 ERVK-24P63145 666 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 MFSD14CQ5VZR4 134 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 HAUS7Q99871 368 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 RIOK1Q9BRS2 568 aaKnown RBP9.35□□□□□ -0.91
CD44-211ENST00000442151 UNC93B1Q9H1C4 597 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 ANTXR1Q9H6X2 564 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 MGAMO43451 1857 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 STRNO43815 780 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 ELNP15502 786 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 ZKSCAN1P17029 563 aaPredicted RBP9.35□□□□□ -0.91
CD44-211ENST00000442151 PTPN5P54829 565 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 RRP1BQ14684 758 aaKnown RBP9.35□□□□□ -0.91
CD44-211ENST00000442151 COG2Q14746 738 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 LBX2Q6XYB7 198 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 CATSPERGQ6ZRH7 1159 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 MB21D1Q8N884 522 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 LPAR1Q92633 364 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 DEFB118Q96PH6 123 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 CRISPLD2Q9H0B8 497 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.35□□□□□ -0.91
CD44-211ENST00000442151 BOLA2Q9H3K6 86 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 PAK6Q9NQU5 681 aaPredicted RBP9.35□□□□□ -0.91
CD44-211ENST00000442151 EMILIN3Q9NT22 766 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 GJD2Q9UKL4 321 aa9.35□□□□□ -0.91
CD44-211ENST00000442151 PHIPQ8WWQ0 1821 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 SLC15A5A6NIM6 579 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 EVI5O60447 810 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 MSCO60682 206 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 ZFYP08048 801 aaPredicted RBP9.34□□□□□ -0.91
CD44-211ENST00000442151 SLURP2P0DP57 97 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 CYP2B6P20813 491 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 ADD2P35612 726 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 EDC3Q96F86 508 aaKnown RBP9.34□□□□□ -0.91
CD44-211ENST00000442151 PAGR1Q9BTK6 254 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 NBPF3Q9H094 633 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 ECHDC1Q9NTX5 307 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.34□□□□□ -0.91
CD44-211ENST00000442151 RBPJLQ9UBG7 517 aa9.34□□□□□ -0.91
CD44-211ENST00000442151 ERC2O15083 957 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 GNAT2P19087 354 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 COPB2P35606 906 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 PPP4R3BQ5MIZ7 849 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 GIMAP6Q6P9H5 292 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 BCL11AQ9H165 835 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 DNAJC18Q9H819 358 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 DCP1AQ9NPI6 582 aaPredicted RBP9.33□□□□□ -0.92
CD44-211ENST00000442151 ATAD5Q96QE3 1844 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 LOC285556D6RIA3 1793 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 PTPRFP10586 1907 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 MYH1P12882 1939 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 KIAA0100Q14667 2235 aaKnown RBP9.33□□□□□ -0.92
CD44-211ENST00000442151 A0A1W2PPC1 479 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 SHMT1P34896 483 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 PLCD1P51178 756 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 ATP2B2Q01814 1243 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 GABPAQ06546 454 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 MAP2K5Q13163 448 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 WDR78Q5VTH9 848 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 GPR142Q7Z601 462 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 APBA2Q99767 749 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 MROH8Q9H579 483 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 RPAP3Q9H6T3 665 aaPredicted RBP9.33□□□□□ -0.92
CD44-211ENST00000442151 DCTPP1Q9H773 170 aa9.33□□□□□ -0.92
CD44-211ENST00000442151 FOCADQ5VW36 1801 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 TCRBV5S4A2TA0A5A2 114 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 H0YGN5 161 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 MBD4O95243 580 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SLC3A2P08195 630 aaKnown RBP9.32□□□□□ -0.92
CD44-211ENST00000442151 PTPREP23469 700 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 ZYXQ15942 572 aaKnown RBP9.32□□□□□ -0.92
CD44-211ENST00000442151 UBE2Q1Q7Z7E8 422 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SIRT2Q8IXJ6 389 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SHCBP1Q8NEM2 672 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SHISA4Q96DD7 197 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 ARMT1Q9H993 441 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 KANSL2Q9H9L4 492 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 GOPCQ9HD26 462 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 ARPP21Q9UBL0 812 aaPredicted RBP9.32□□□□□ -0.92
CD44-211ENST00000442151 NDUFB9Q9Y6M9 179 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SLC4A4Q9Y6R1 1079 aa9.32□□□□□ -0.92
CD44-211ENST00000442151 SLC25A27O95847 323 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 VCAM1P19320 739 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 AAMPQ13685 434 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms