RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 TECP42680 631 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 RABL6Q3YEC7 729 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 TMOD4Q9NZQ9 345 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 CHGBP05060 677 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 KRT83P78385 493 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 RAPGEF1Q13905 1077 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 ZNF569Q5MCW4 686 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 ATG9AQ7Z3C6 839 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 A0A087WWV3 80 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 RPL13P26373 211 aaKnown RBP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 SPICE1Q8N0Z3 855 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 FAM212AQ96EL1 285 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 RNF26Q9BY78 433 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 XPO4Q9C0E2 1151 aaKnown RBP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 RTEL1Q9NZ71 1219 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 TOB2Q14106 344 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-205ENST00000439160 GOPCQ9HD26 462 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 SEPT7Q16181 437 aaKnown RBP13.78□□□□□ -0.2
TCOF1-205ENST00000439160 SLFN13Q68D06 897 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 NELFCDQ8IXH7 590 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 TRERF1Q96PN7 1200 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 SERPINB13Q9UIV8 391 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 IQSEC2Q5JU85 1478 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 GSTTP1A0A1W2PQM5 241 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 CTAGE15A4D2H0 777 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 B4DLN1 442 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 TACC1O75410 805 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 CTAGE8P0CG41 777 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 KIF23Q02241 960 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-205ENST00000439160 SLC39A14Q15043 492 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 CTAGE6Q86UF2 777 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 CTAGE4Q8IX94 777 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 NAA15Q9BXJ9 866 aaKnown RBP13.78□□□□□ -0.2
TCOF1-205ENST00000439160 DNM3Q9UQ16 869 aa13.78□□□□□ -0.2
TCOF1-205ENST00000439160 CTAGE9A4FU28 777 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 H7C1D1 291 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 SLU7O95391 586 aaKnown RBP13.77□□□□□ -0.2
TCOF1-205ENST00000439160 IFNAR1P17181 557 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 NEK8Q86SG6 692 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 TBC1D10CQ8IV04 446 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 CCDC113Q9H0I3 377 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 VWDEQ8N2E2 1590 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 CEMIPQ8WUJ3 1361 aa13.77□□□□□ -0.2
TCOF1-205ENST00000439160 ARHGEF35A5YM69 484 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 USP17L3A6NCW0 530 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 USP17L4A6NCW7 530 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 RAD17O75943 681 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 FMNL1O95466 1100 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-205ENST00000439160 PDIA6Q15084 440 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 KRBA2Q6ZNG9 492 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 USP17L1Q7RTZ2 530 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 MARCH10Q8NA82 808 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-205ENST00000439160 NELFBQ8WX92 580 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 CSRNP1Q96S65 589 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 CCDC169A6NNP5 214 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 TMEM232C9JQI7 657 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 MCM3P25205 808 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 TMC4Q7Z404 712 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 CHURC1Q8WUH1 139 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 ZBTB9Q96C00 473 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 GJD4Q96KN9 370 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-205ENST00000439160 PCDHA1Q9Y5I3 950 aa13.77□□□□□ -0.21
TCOF1-205ENST00000439160 SPATA31D1Q6ZQQ2 1576 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 PPP1R2P41236 205 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 LIFRP42702 1097 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 ABCB5Q2M3G0 1257 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 PRR16Q569H4 304 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 EEF2KMTQ96G04 330 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 CAPZA3Q96KX2 299 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 CETN3O15182 167 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 HARSP12081 509 aaKnown RBP13.76□□□□□ -0.21
TCOF1-205ENST00000439160 CTNNA2P26232 953 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 IFI16Q16666 785 aaKnown RBP13.76□□□□□ -0.21
TCOF1-205ENST00000439160 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.76□□□□□ -0.21
TCOF1-205ENST00000439160 PCDHA5Q9Y5H7 936 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 OVOS2A0A0G2JMS6 1433 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 CYP2D6P10635 497 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 KRT9P35527 623 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 USP17L2Q6R6M4 530 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 PCDHA12Q9UN75 941 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 RIPOR2Q9Y4F9 1068 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 TNFAIP1Q13829 316 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 CCDC122Q5T0U0 273 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 SYMPKQ92797 1274 aaKnown RBP13.76□□□□□ -0.21
TCOF1-205ENST00000439160 MROH2AA6NES4 1674 aa13.76□□□□□ -0.21
TCOF1-205ENST00000439160 ZBED4O75132 1171 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 GDF11O95390 407 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 OR52Z1P0C646 297 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 SLC16A2P36021 539 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 IFFO1Q0D2I5 559 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 LINC00301Q8NCQ3 95 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 RGS22Q8NE09 1264 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 TSC1Q92574 1164 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 FSD2A1L4K1 749 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 KCTD1Q719H9 257 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 KIF2CQ99661 725 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 SRRTQ9BXP5 876 aaKnown RBP13.75□□□□□ -0.21
TCOF1-205ENST00000439160 IMPG2Q9BZV3 1241 aa13.75□□□□□ -0.21
TCOF1-205ENST00000439160 CSRNP2Q9H175 543 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms