RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 NECTIN1Q15223 517 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 SH3D19Q5HYK7 790 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 IQCA1Q86XH1 822 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 NCOA7Q8NI08 942 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 SMCR8Q8TEV9 937 aaPredicted RBP17.16■□□□□ 0.34
SGCE-204ENST00000428696 TANGO6Q9C0B7 1094 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 IL17RBQ9NRM6 502 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 NYAP2Q9P242 653 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 CTCFP49711 727 aaPredicted RBP17.15■□□□□ 0.34
SGCE-204ENST00000428696 LBX1P52954 281 aa17.15■□□□□ 0.34
SGCE-204ENST00000428696 PPP4R3BQ5MIZ7 849 aa17.15■□□□□ 0.34
SGCE-204ENST00000428696 R3HDMLQ9H3Y0 253 aa17.15■□□□□ 0.34
SGCE-204ENST00000428696 RPAP3Q9H6T3 665 aaPredicted RBP17.15■□□□□ 0.34
SGCE-204ENST00000428696 ATAD5Q96QE3 1844 aa17.15■□□□□ 0.34
SGCE-204ENST00000428696 IGKV6D-41A0A0C4DH26 115 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 F5H6K3 240 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 VCAM1P19320 739 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 KLRC3Q07444 240 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 KIAA1755Q5JYT7 1200 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 STOX1Q6ZVD7 989 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 PARK7Q99497 189 aaKnown RBP17.14■□□□□ 0.33
SGCE-204ENST00000428696 VCPKMTQ9H867 229 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 SAGE1Q9NXZ1 904 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 CPA4Q9UI42 421 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 PNMA3Q9UL41 463 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 LAMB1P07942 1786 aa17.14■□□□□ 0.33
SGCE-204ENST00000428696 ERICH2A1L162 156 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L15C9J2P7 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L13C9JLJ4 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L11C9JVI0 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L18D6R9N7 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L22D6RA61 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L17D6RBQ6 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L19D6RCP7 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L20D6RJB6 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 IFIT3O14879 490 aaKnown RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 MCCP23508 829 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 USP17L24Q0WX57 530 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 CYB5R4Q7L1T6 521 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 ZSCAN10Q96SZ4 725 aaPredicted RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 NUP88Q99567 741 aaPredicted RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 ASCC2Q9H1I8 757 aaPredicted RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 MYH8P13535 1937 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 IKQ13123 557 aaPredicted RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 FAM83BQ5T0W9 1011 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 SLFN13Q68D06 897 aa17.13■□□□□ 0.33
SGCE-204ENST00000428696 P2RX7Q99572 595 aaKnown RBP17.13■□□□□ 0.33
SGCE-204ENST00000428696 FLOT1O75955 427 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 NDUFB10O96000 172 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 TOP1P11387 765 aaKnown RBP17.12■□□□□ 0.33
SGCE-204ENST00000428696 SART3Q15020 963 aaKnown RBP17.12■□□□□ 0.33
SGCE-204ENST00000428696 CCDC178Q5BJE1 867 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 RASEFQ8IZ41 740 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 LPAR1Q92633 364 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 MKL1Q969V6 931 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 TMEM47Q9BQJ4 181 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 USP26Q9BXU7 913 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 KAT14Q9H8E8 782 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 ZCCHC17Q9NP64 241 aaKnown RBP17.12■□□□□ 0.33
SGCE-204ENST00000428696 TCP11L1Q9NUJ3 509 aa17.12■□□□□ 0.33
SGCE-204ENST00000428696 TNKSO95271 1327 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 GPR25O00155 361 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 HSPA8P11142 646 aaKnown RBP17.11■□□□□ 0.33
SGCE-204ENST00000428696 CCDC96Q2M329 555 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 TMEM67Q5HYA8 995 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 IFIT1BQ5T764 474 aaKnown RBP17.11■□□□□ 0.33
SGCE-204ENST00000428696 C12orf42Q96LP6 360 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 TTC14Q96N46 770 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 NEK1Q96PY6 1258 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 PAGR1Q9BTK6 254 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 SLC45A1Q9Y2W3 748 aa17.11■□□□□ 0.33
SGCE-204ENST00000428696 PLIN4Q96Q06 1357 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 PRC1O43663 620 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 TLR2O60603 784 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 EIF5BO60841 1220 aaKnown RBP17.1■□□□□ 0.33
SGCE-204ENST00000428696 SEC24BO95487 1268 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 HOXA7P31268 230 aaPredicted RBP17.1■□□□□ 0.33
SGCE-204ENST00000428696 MCM5P33992 734 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 HSPA4P34932 840 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 SLC1A4P43007 532 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 FGD1P98174 961 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 KRT32Q14532 448 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 CATSPERGQ6ZRH7 1159 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 ANKRD13CQ8N6S4 541 aa17.1■□□□□ 0.33
SGCE-204ENST00000428696 ENAHQ8N8S7 591 aaPredicted RBP17.1■□□□□ 0.33
SGCE-204ENST00000428696 JAKMIP1Q96N16 626 aaKnown RBP17.1■□□□□ 0.33
SGCE-204ENST00000428696 PHIPQ8WWQ0 1821 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 WDR46O15213 610 aaKnown RBP17.09■□□□□ 0.33
SGCE-204ENST00000428696 BMP3P12645 472 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 SLC4A3P48751 1232 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 NT5C2P49902 561 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 HERVK_113P62684 666 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 COG2Q14746 738 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 NFXL1Q6ZNB6 911 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 DGKHQ86XP1 1220 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 CCAR1Q8IX12 1150 aaKnown RBP17.09■□□□□ 0.33
SGCE-204ENST00000428696 ZNF296Q8WUU4 475 aaPredicted RBP17.09■□□□□ 0.33
SGCE-204ENST00000428696 KIFC2Q96AC6 838 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 LRRC2Q9BYS8 371 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 GPCPD1Q9NPB8 672 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms