RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 ZKSCAN1P17029 563 aaPredicted RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 VCAM1P19320 739 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 RCSD1Q6JBY9 416 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 MB21D2Q8IYB1 491 aaPredicted RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 LRRC47Q8N1G4 583 aaKnown RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 SYNPO2Q9UMS6 1093 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 CA12O43570 354 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 HSPA1AP0DMV8 641 aaKnown RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 HSPA1BP0DMV9 641 aaKnown RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 SPICE1Q8N0Z3 855 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 LPAR1Q92633 364 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 TTC14Q96N46 770 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 ZSCAN10Q96SZ4 725 aaPredicted RBP28.84■■■□□ 2.21
VEGFA-209ENST00000425836 GOPCQ9HD26 462 aa28.84■■■□□ 2.21
VEGFA-209ENST00000425836 EIF5BO60841 1220 aaKnown RBP28.83■■■□□ 2.21
VEGFA-209ENST00000425836 TBC1D8O95759 1140 aa28.83■■■□□ 2.21
VEGFA-209ENST00000425836 HOXA7P31268 230 aaPredicted RBP28.83■■■□□ 2.21
VEGFA-209ENST00000425836 TAF1CQ15572 869 aaPredicted RBP28.83■■■□□ 2.21
VEGFA-209ENST00000425836 F5H6K3 240 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 KLRC3Q07444 240 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 PABPC4Q13310 644 aaKnown RBP eCLIP28.82■■■□□ 2.26e-13■■■■■ 112.3
VEGFA-209ENST00000425836 CRHR2Q13324 411 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 COL9A3Q14050 684 aaPredicted RBP28.82■■■□□ 2.2
VEGFA-209ENST00000425836 CCDC178Q5BJE1 867 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 DGKHQ86XP1 1220 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 CFHR5Q9BXR6 569 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 R3HDMLQ9H3Y0 253 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 SNX14Q9Y5W7 946 aa28.82■■■□□ 2.2
VEGFA-209ENST00000425836 RAD21O60216 631 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 ANTXR2P58335 489 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 ADCK5Q3MIX3 580 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 TMEM47Q9BQJ4 181 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 UBAC1Q9BSL1 405 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 PTPRFP10586 1907 aa28.81■■■□□ 2.2
VEGFA-209ENST00000425836 NDUFB10O96000 172 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 CYP2C8P10632 490 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 TOP1P11387 765 aaKnown RBP28.8■■■□□ 2.2
VEGFA-209ENST00000425836 KRT32Q14532 448 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 CHST3Q7LGC8 479 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 ENAHQ8N8S7 591 aaPredicted RBP28.8■■■□□ 2.2
VEGFA-209ENST00000425836 GMCL1P1Q8NEA9 526 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 ANKS1AQ92625 1134 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 NEK1Q96PY6 1258 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 RPAP3Q9H6T3 665 aaPredicted RBP28.8■■■□□ 2.2
VEGFA-209ENST00000425836 ZFYVE28Q9HCC9 887 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 TSKSQ9UJT2 592 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 TNKSO95271 1327 aa28.8■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L15C9J2P7 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L13C9JLJ4 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L11C9JVI0 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L18D6R9N7 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L22D6RA61 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L17D6RBQ6 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L19D6RCP7 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L20D6RJB6 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 FOXN1O15353 648 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 USP17L24Q0WX57 530 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 PARK7Q99497 189 aaKnown RBP28.79■■■□□ 2.2
VEGFA-209ENST00000425836 ASCC2Q9H1I8 757 aaPredicted RBP28.79■■■□□ 2.2
VEGFA-209ENST00000425836 LOC285556D6RIA3 1793 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 OSBPP22059 807 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 MCCP23508 829 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 CATSPERGQ6ZRH7 1159 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 PNMA3Q9UL41 463 aa28.79■■■□□ 2.2
VEGFA-209ENST00000425836 WDR46O15213 610 aaKnown RBP28.78■■■□□ 2.2
VEGFA-209ENST00000425836 SEC23AQ15436 765 aa28.78■■■□□ 2.2
VEGFA-209ENST00000425836 SLFN13Q68D06 897 aa28.78■■■□□ 2.2
VEGFA-209ENST00000425836 IFIT3O14879 490 aaKnown RBP28.77■■■□□ 2.2
VEGFA-209ENST00000425836 MCM5P33992 734 aa28.77■■■□□ 2.2
VEGFA-209ENST00000425836 PRC1O43663 620 aa28.76■■■□□ 2.19
VEGFA-209ENST00000425836 TLR2O60603 784 aa28.76■■■□□ 2.19
VEGFA-209ENST00000425836 IRX3P78415 501 aaPredicted RBP28.76■■■□□ 2.19
VEGFA-209ENST00000425836 FAM83BQ5T0W9 1011 aa28.76■■■□□ 2.19
VEGFA-209ENST00000425836 NUP88Q99567 741 aaPredicted RBP28.76■■■□□ 2.19
VEGFA-209ENST00000425836 P2RX7Q99572 595 aaKnown RBP28.76■■■□□ 2.19
VEGFA-209ENST00000425836 IGDCC4Q8TDY8 1250 aa28.75■■■□□ 2.19
VEGFA-209ENST00000425836 TANGO6Q9C0B7 1094 aa28.75■■■□□ 2.19
VEGFA-209ENST00000425836 ADGRA2Q96PE1 1338 aa28.75■■■□□ 2.19
VEGFA-209ENST00000425836 IFIT1BQ5T764 474 aaKnown RBP28.75■■■□□ 2.19
VEGFA-209ENST00000425836 GMCL1Q96IK5 515 aa28.75■■■□□ 2.19
VEGFA-209ENST00000425836 JAKMIP1Q96N16 626 aaKnown RBP28.75■■■□□ 2.19
VEGFA-209ENST00000425836 MTA3Q9BTC8 594 aa28.75■■■□□ 2.19
VEGFA-209ENST00000425836 HSPA8P11142 646 aaKnown RBP28.74■■■□□ 2.19
VEGFA-209ENST00000425836 SART3Q15020 963 aaKnown RBP28.74■■■□□ 2.19
VEGFA-209ENST00000425836 TMEM67Q5HYA8 995 aa28.74■■■□□ 2.19
VEGFA-209ENST00000425836 SMCR8Q8TEV9 937 aaPredicted RBP28.74■■■□□ 2.19
VEGFA-209ENST00000425836 CHMP4CQ96CF2 233 aa28.74■■■□□ 2.19
VEGFA-209ENST00000425836 KAT14Q9H8E8 782 aa28.74■■■□□ 2.19
VEGFA-209ENST00000425836 MTMR7Q9Y216 660 aa28.74■■■□□ 2.19
VEGFA-209ENST00000425836 ERICH2A1L162 156 aa28.73■■■□□ 2.19
VEGFA-209ENST00000425836 CTCFP49711 727 aaPredicted RBP28.73■■■□□ 2.19
VEGFA-209ENST00000425836 EXOSC10Q01780 885 aaKnown RBP28.73■■■□□ 2.19
VEGFA-209ENST00000425836 C17orf99Q6UX52 265 aa28.73■■■□□ 2.19
VEGFA-209ENST00000425836 DHX32Q7L7V1 743 aaKnown RBP28.73■■■□□ 2.19
VEGFA-209ENST00000425836 SENP2Q9HC62 589 aa28.73■■■□□ 2.19
VEGFA-209ENST00000425836 GPHNQ9NQX3 736 aaPredicted RBP28.73■■■□□ 2.19
VEGFA-209ENST00000425836 HMGB1P09429 215 aaKnown RBP28.72■■■□□ 2.19
VEGFA-209ENST00000425836 BMP3P12645 472 aa28.72■■■□□ 2.19
VEGFA-209ENST00000425836 SLC1A4P43007 532 aa28.72■■■□□ 2.19
VEGFA-209ENST00000425836 HERVK_113P62684 666 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms