RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SPATA1Q5VX52 437 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 KLHL10Q6JEL2 608 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 NUTM2AQ8IVF1 878 aaPredicted RBP11.24□□□□□ -0.61
SS18-203ENST00000415083 WASF1Q92558 559 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 ZBTB9Q96C00 473 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 PANX2Q96RD6 677 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 PNKPQ96T60 521 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 MTA3Q9BTC8 594 aa11.24□□□□□ -0.61
SS18-203ENST00000415083 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.24□□□□□ -0.61
SS18-203ENST00000415083 GNAT2P19087 354 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 CASP14P31944 242 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 RCSD1Q6JBY9 416 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 TYW1BQ6NUM6 668 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 ACRBPQ8NEB7 543 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 CPLX3Q8WVH0 158 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 MFAP3LO75121 409 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 GYS2P54840 703 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 ATP2C1P98194 919 aaPredicted RBP11.23□□□□□ -0.61
SS18-203ENST00000415083 PTGDRQ13258 359 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 TMTC3Q6ZXV5 915 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 TRIM22Q8IYM9 498 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 UBXN4Q92575 508 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 FAM84BQ96KN1 310 aaPredicted RBP11.23□□□□□ -0.61
SS18-203ENST00000415083 LZTFL1Q9NQ48 299 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 LRP2BPQ9P2M1 347 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 SYNRGQ9UMZ2 1314 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 ZSCAN12O43309 604 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 CASQ1P31415 396 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 PMS1P54277 932 aaKnown RBP11.23□□□□□ -0.61
SS18-203ENST00000415083 RASGRP2Q7LDG7 609 aa11.23□□□□□ -0.61
SS18-203ENST00000415083 MAGEB6P1A0A0J9YX57 407 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 TRIM75PA6NK02 468 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 AKR1B15C9JRZ8 316 aaPredicted RBP11.22□□□□□ -0.61
SS18-203ENST00000415083 IGSF22Q8N9C0 903 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 ACSBG1Q96GR2 724 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 SUGCTQ9HAC7 445 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 CCDC87Q9NVE4 849 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 TFR2Q9UP52 801 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 RASSF10A6NK89 507 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 M0R2N6 131 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 KRT2P35908 639 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 KRT31Q15323 416 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 SAFBQ15424 915 aaKnown RBP eCLIP11.22□□□□□ -0.61
SS18-203ENST00000415083 ERFEQ4G0M1 354 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 NAALADL2Q58DX5 795 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 FAM47AQ5JRC9 791 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 CDC5LQ99459 802 aaKnown RBP11.22□□□□□ -0.61
SS18-203ENST00000415083 ABCF2Q9UG63 623 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 CTNND2Q9UQB3 1225 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 IRS2Q9Y4H2 1338 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 LRRC10BA6NIK2 292 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 CDK11BP21127 795 aaKnown RBP11.22□□□□□ -0.61
SS18-203ENST00000415083 DHX8Q14562 1220 aaKnown RBP11.22□□□□□ -0.61
SS18-203ENST00000415083 ZSWIM4Q9H7M6 989 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 TRIM10Q9UDY6 481 aa11.22□□□□□ -0.61
SS18-203ENST00000415083 MAST2Q6P0Q8 1798 aa11.21□□□□□ -0.61
SS18-203ENST00000415083 CCP110O43303 1012 aa11.21□□□□□ -0.61
SS18-203ENST00000415083 CCT6AP40227 531 aaKnown RBP11.21□□□□□ -0.61
SS18-203ENST00000415083 MAPK8IP2Q13387 824 aaPredicted RBP11.21□□□□□ -0.61
SS18-203ENST00000415083 MARCH10Q8NA82 808 aaPredicted RBP11.21□□□□□ -0.61
SS18-203ENST00000415083 CELF1Q92879 486 aaKnown RBP11.21□□□□□ -0.61
SS18-203ENST00000415083 TRERF1Q96PN7 1200 aa11.21□□□□□ -0.61
SS18-203ENST00000415083 GDAQ9Y2T3 454 aa11.21□□□□□ -0.61
SS18-203ENST00000415083 EP400Q96L91 3159 aa11.21□□□□□ -0.61
SS18-203ENST00000415083 MAP2K7O14733 419 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 KCNQ4P56696 695 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 TEX35Q5T0J7 233 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 NSUN4Q96CB9 384 aaKnown RBP11.21□□□□□ -0.62
SS18-203ENST00000415083 CCDC34Q96HJ3 373 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 UBAC1Q9BSL1 405 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 SRRTQ9BXP5 876 aaKnown RBP11.21□□□□□ -0.62
SS18-203ENST00000415083 NACAP1Q9BZK3 213 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 MINPP1Q9UNW1 487 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 NIP7Q9Y221 180 aaKnown RBP eCLIP11.21□□□□□ -0.62
SS18-203ENST00000415083 USP17L12C9JPN9 530 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 USP17L21D6R901 530 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 TTC38Q5R3I4 469 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 TXNRD3Q86VQ6 643 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 TMTC2Q8N394 836 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 ESR2Q92731 530 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 CHP1Q99653 195 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 NOL10Q9BSC4 688 aaKnown RBP11.21□□□□□ -0.62
SS18-203ENST00000415083 IL17RBQ9NRM6 502 aa11.21□□□□□ -0.62
SS18-203ENST00000415083 LIMA1Q9UHB6 759 aaKnown RBP11.21□□□□□ -0.62
SS18-203ENST00000415083 TNRC6CQ9HCJ0 1690 aaKnown RBP11.2□□□□□ -0.62
SS18-203ENST00000415083 CCDC88AQ3V6T2 1871 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 TRIM49BA6NDI0 452 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 PP2D1A8MPX8 630 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 CCDC152Q4G0S7 254 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 GPR161Q8N6U8 529 aaKnown RBP11.2□□□□□ -0.62
SS18-203ENST00000415083 MNS1Q8NEH6 495 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 GSDMAQ96QA5 445 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 BRIP1Q9BX63 1249 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 POLR3GO15318 223 aaPredicted RBP11.2□□□□□ -0.62
SS18-203ENST00000415083 KCNQ2O43526 872 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 ATP6V1AP38606 617 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 AMPD2Q01433 879 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 IFIT1BQ5T764 474 aaKnown RBP11.2□□□□□ -0.62
SS18-203ENST00000415083 TMCO3Q6UWJ1 677 aa11.2□□□□□ -0.62
SS18-203ENST00000415083 PTF1AQ7RTS3 328 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms