RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DGKHQ86XP1 1220 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 LRRC2Q9BYS8 371 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 NYAP2Q9P242 653 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 STX8Q9UNK0 236 aa15.67■□□□□ 0.1
LIMS1-204ENST00000409441 ERICH2A1L162 156 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 SPDYE5A6NIY4 337 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 TTLL1O95922 423 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 NOVP48745 357 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 PPATQ06203 517 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 SPP2Q13103 211 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 TMEM67Q5HYA8 995 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 PPP4R3BQ5MIZ7 849 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 RCSD1Q6JBY9 416 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 ENAHQ8N8S7 591 aaPredicted RBP15.66■□□□□ 0.1
LIMS1-204ENST00000409441 ACER1Q8TDN7 264 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 ANKS1AQ92625 1134 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 OPTNQ96CV9 577 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 OTUD5Q96G74 571 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 TMEM87BQ96K49 555 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 MTA3Q9BTC8 594 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 WDR18Q9BV38 432 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 AS3MTQ9HBK9 375 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 GPHNQ9NQX3 736 aaPredicted RBP15.66■□□□□ 0.1
LIMS1-204ENST00000409441 CREBZFQ9NS37 354 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 AFG3L2Q9Y4W6 797 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 TRPM7Q96QT4 1865 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 TNKSO95271 1327 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 WDR19Q8NEZ3 1342 aa15.66■□□□□ 0.1
LIMS1-204ENST00000409441 A0A1W2PRG0 241 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 ZNF157P51786 506 aaPredicted RBP15.65■□□□□ 0.1
LIMS1-204ENST00000409441 FGD1P98174 961 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 SEC23AQ15436 765 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 RGMBQ6NW40 437 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 ZNF280CQ8ND82 737 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 MKL1Q969V6 931 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 ARHGEF10LQ9HCE6 1279 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 SMC3Q9UQE7 1217 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 TRIM75PA6NK02 468 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 ECE1P42892 770 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 WTAPQ15007 396 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 Q6ZUG5 572 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 HHIPL1Q96JK4 782 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 TMEM47Q9BQJ4 181 aa15.65■□□□□ 0.1
LIMS1-204ENST00000409441 USP17L10C9JJH3 530 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 SH2B2O14492 632 aaPredicted RBP15.64■□□□□ 0.09
LIMS1-204ENST00000409441 IRF6O14896 467 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 MBD3O95983 291 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 TOP1P11387 765 aaKnown RBP15.64■□□□□ 0.09
LIMS1-204ENST00000409441 PPIL2Q13356 520 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 IFIT1BQ5T764 474 aaKnown RBP15.64■□□□□ 0.09
LIMS1-204ENST00000409441 TMTC2Q8N394 836 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 WNK4Q96J92 1243 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 LY9Q9HBG7 655 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 SENP2Q9HC62 589 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 TMX2Q9Y320 296 aa15.64■□□□□ 0.09
LIMS1-204ENST00000409441 CXCL11O14625 94 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 GJA5P36382 358 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 LIFRP42702 1097 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 BACE1P56817 501 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 C1QTNF8P60827 252 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 DEFB115Q30KQ5 88 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 SPRYD7Q5W111 196 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 FBXL16Q8N461 479 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 CCDC102AQ96A19 550 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 FEZ1Q99689 392 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 MYH8P13535 1937 aa15.63■□□□□ 0.09
LIMS1-204ENST00000409441 PRPF40AO75400 957 aaKnown RBP15.62■□□□□ 0.09
LIMS1-204ENST00000409441 MKRN3Q13064 507 aaKnown RBP15.62■□□□□ 0.09
LIMS1-204ENST00000409441 MTMR2Q13614 643 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 NFXL1Q6ZNB6 911 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 LRRC47Q8N1G4 583 aaKnown RBP15.62■□□□□ 0.09
LIMS1-204ENST00000409441 KIAA1683Q9H0B3 1180 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 SH2D4AQ9H788 454 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 KAT14Q9H8E8 782 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 TCHHQ07283 1943 aa15.62■□□□□ 0.09
LIMS1-204ENST00000409441 C19orf81C9J6K1 198 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 F5H6K3 240 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 STX6O43752 255 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 LARGE1O95461 756 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 ZSCAN22P10073 491 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 XRCC6P12956 609 aaKnown RBP eCLIP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 ZNF445P59923 1031 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 KLRC3Q07444 240 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 ZYXQ15942 572 aaKnown RBP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 PAXIP1Q6ZW49 1069 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 RASAL3Q86YV0 1011 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 CCDC83Q8IWF9 413 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 BRF1Q92994 677 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 AGXT2Q9BYV1 514 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 GRPEL1Q9HAV7 217 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 SYNPO2Q9UMS6 1093 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 KCNH4Q9UQ05 1017 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 ATP6V1DQ9Y5K8 247 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 CCDC69A6NI79 296 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 RASSF10A6NK89 507 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 RAD21O60216 631 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 ZBTB48P10074 688 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 HTRA3P83110 453 aa15.61■□□□□ 0.09
LIMS1-204ENST00000409441 TOB2Q14106 344 aaPredicted RBP15.61■□□□□ 0.09
LIMS1-204ENST00000409441 DOCK1Q14185 1865 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms