RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARHGEF37A1IGU5 675 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 NAA25Q14CX7 972 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 LRCH2Q5VUJ6 765 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 JAKMIP3Q5VZ66 844 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 EXOC8Q8IYI6 725 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 CD209Q9NNX6 404 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 ATN1P54259 1190 aaPredicted RBP8.19□□□□□ -1.1
SCN9A-202ENST00000409435 AP1ARQ63HQ0 302 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 RNF34Q969K3 372 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 HMX1Q9NP08 348 aaPredicted RBP8.19□□□□□ -1.1
SCN9A-202ENST00000409435 ABCA6Q8N139 1617 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 GYS1P13807 737 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 SP3Q02447 781 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 TFDP1Q14186 410 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 PPP2R5BQ15173 497 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 SERPINB13Q9UIV8 391 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 C6orf222P0C671 652 aaPredicted RBP8.19□□□□□ -1.1
SCN9A-202ENST00000409435 RFC1P35251 1148 aaPredicted RBP8.19□□□□□ -1.1
SCN9A-202ENST00000409435 PRAMEF18Q5VWM3 479 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 KRT79Q5XKE5 535 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 LARP1BQ659C4 914 aaKnown RBP8.19□□□□□ -1.1
SCN9A-202ENST00000409435 CEP120Q8N960 986 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 SUCLG2Q96I99 432 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 SUGCTQ9HAC7 445 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 HMG20BQ9P0W2 317 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 NUB1Q9Y5A7 615 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 TCERG1LQ5VWI1 586 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 CDHR1Q96JP9 859 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 MEIS3Q99687 375 aa8.19□□□□□ -1.1
SCN9A-202ENST00000409435 MYOM2P54296 1465 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 STAT2P52630 851 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 HLFQ16534 295 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 MCTP2Q6DN12 878 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 FMNL3Q8IVF7 1028 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 KIF18AQ8NI77 898 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 ARHGAP45Q92619 1136 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 TBC1D2Q9BYX2 928 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 DEFB129Q9H1M3 183 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 VPS33BQ9H267 617 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 AAASQ9NRG9 546 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 C19orf81C9J6K1 198 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 ADCY7P51828 1080 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 CACNB3P54284 484 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 TTLL4Q14679 1199 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 CEP57Q86XR8 500 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 RAB11FIP4Q86YS3 637 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 SMAP1Q8IYB5 467 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 ADGRB2O60241 1585 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 EPB41L2O43491 1005 aaKnown RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 PRDM1O75626 825 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 SERPINC1P01008 464 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 CCT2P78371 535 aaKnown RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 CCDC102BQ68D86 513 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 LRRC47Q8N1G4 583 aaKnown RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 TMEM39AQ9NV64 488 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 PDE8BO95263 885 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 ATF7P17544 494 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 GCLCP48506 637 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 DNAJC21Q5F1R6 531 aaKnown RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 NEK1Q96PY6 1258 aa8.18□□□□□ -1.1
SCN9A-202ENST00000409435 PYM1Q9BRP8 204 aaKnown RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 IBTKQ9P2D0 1353 aaPredicted RBP8.18□□□□□ -1.1
SCN9A-202ENST00000409435 KLF18A0A0U1RQI7 1052 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ARHGEF35A5YM69 484 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 XPOTO43592 962 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 TRPC3Q13507 836 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 PTPN14Q15678 1187 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 AKNAD1Q5T1N1 836 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 METTL23Q86XA0 190 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MSANTD4Q8NCY6 345 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 PPFIBP2Q8ND30 876 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 RAB23Q9ULC3 237 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 USP19O94966 1318 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ZNF532Q9HCE3 1301 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 BMP3P12645 472 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ILDR2Q71H61 639 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MIER3Q7Z3K6 550 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 NECAB2Q7Z6G3 386 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 TBC1D16Q8TBP0 767 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MYCBPQ99417 103 aaPredicted RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 PARP2Q9UGN5 583 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 EXOC7Q9UPT5 735 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ARPP19P56211 112 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 NFX1Q12986 1120 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 CYP4F22Q6NT55 531 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 NBPF10Q6P3W6 841 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MRPL50Q8N5N7 158 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 DEPTORQ8TB45 409 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 FNBP1Q96RU3 617 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 SLF1Q9BQI6 1058 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 KATNAL1Q9BW62 490 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MYO3AQ8NEV4 1616 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MYPNQ86TC9 1320 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 IQGAP1P46940 1657 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ZWINTO95229 277 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 SH3BGRP55822 239 aaPredicted RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 CFAP58Q5T655 872 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 MIS18BP1Q6P0N0 1132 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 TBC1D9Q6ZT07 1266 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ERO1BQ86YB8 467 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms