RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 NFXL1Q6ZNB6 911 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 CCDC84Q86UT8 332 aaPredicted RBP14.43□□□□□ -0.1
LINC00339-201ENST00000404210 CLEC10AQ8IUN9 316 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 ACER1Q8TDN7 264 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 OPTNQ96CV9 577 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 ZNF274Q96GC6 653 aaPredicted RBP14.43□□□□□ -0.1
LINC00339-201ENST00000404210 KIAA1683Q9H0B3 1180 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 SENP2Q9HC62 589 aa14.43□□□□□ -0.1
LINC00339-201ENST00000404210 ECE1P42892 770 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 USP14P54578 494 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 BACE1P56817 501 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 SH3D19Q5HYK7 790 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 CATIPQ7Z7H3 387 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 PNMA1Q8ND90 353 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 MAP3K14Q99558 947 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 VCPKMTQ9H867 229 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 CREBZFQ9NS37 354 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 KCNH4Q9UQ05 1017 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 SLC12A7Q9Y666 1083 aa14.42□□□□□ -0.1
LINC00339-201ENST00000404210 F5H6K3 240 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 CALM1P0DP23 149 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 CALM2P0DP24 149 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 CALM3P0DP25 149 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 RCAN1P53805 252 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 KLRC3Q07444 240 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 APOBRQ0VD83 1088 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 TROAPQ12815 778 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 USP17L2Q6R6M4 530 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 ZNF654Q8IZM8 581 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 GMCL1P1Q8NEA9 526 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 SNX21Q969T3 373 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 OTUD5Q96G74 571 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 WNK4Q96J92 1243 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 ZSCAN31Q96LW9 406 aaPredicted RBP14.41□□□□□ -0.1
LINC00339-201ENST00000404210 GOPCQ9HD26 462 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.41□□□□□ -0.1
LINC00339-201ENST00000404210 BRPF3Q9ULD4 1205 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 ABT1Q9ULW3 272 aaKnown RBP14.41□□□□□ -0.1
LINC00339-201ENST00000404210 LIMCH1Q9UPQ0 1083 aa14.41□□□□□ -0.1
LINC00339-201ENST00000404210 KLF18A0A0U1RQI7 1052 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 IRF6O14896 467 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 DDAH1O94760 285 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 ZBTB48P10074 688 aaPredicted RBP14.4□□□□□ -0.1
LINC00339-201ENST00000404210 GJA5P36382 358 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 ZNF157P51786 506 aaPredicted RBP14.4□□□□□ -0.1
LINC00339-201ENST00000404210 PPP2R5BQ15173 497 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 SPRYD7Q5W111 196 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 SLFN13Q68D06 897 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 APOA5Q6Q788 366 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 LRRC47Q8N1G4 583 aaKnown RBP14.4□□□□□ -0.1
LINC00339-201ENST00000404210 LPAR1Q92633 364 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 CCDC102AQ96A19 550 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 C12orf42Q96LP6 360 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 FEZ1Q99689 392 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 TPCN1Q9ULQ1 816 aa14.4□□□□□ -0.1
LINC00339-201ENST00000404210 TRIM75PA6NK02 468 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 ZBTB43O43298 467 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 SNHG28P0DPA3 235 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 PDIA3P30101 505 aaKnown RBP14.39□□□□□ -0.11
LINC00339-201ENST00000404210 MTMR2Q13614 643 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 DEFB115Q30KQ5 88 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 DCAF4Q8WV16 495 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 LARP6Q9BRS8 491 aaKnown RBP14.39□□□□□ -0.11
LINC00339-201ENST00000404210 TSHZ2Q9NRE2 1034 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 EMILIN3Q9NT22 766 aa14.39□□□□□ -0.11
LINC00339-201ENST00000404210 A0A0G2JLL6 359 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 RASSF10A6NK89 507 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 CD2BP2O95400 341 aaKnown RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 NDUFB10O96000 172 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 SLC10A3P09131 477 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 PDHBP11177 359 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 GTF2A2P52657 109 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 SNAPC2Q13487 334 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 GRM4Q14833 912 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 ME3Q16798 604 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 FASTKD5Q7L8L6 764 aaKnown RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 PRRT2Q7Z6L0 340 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 RASAL3Q86YV0 1011 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 FANCBQ8NB91 859 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 PROCA1Q8NCQ7 364 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 NUP133Q8WUM0 1156 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 CHMP4CQ96CF2 233 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 GMCL1Q96IK5 515 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 SH2B1Q9NRF2 756 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-201ENST00000404210 TMOD4Q9NZQ9 345 aa14.38□□□□□ -0.11
LINC00339-201ENST00000404210 PALM3A6NDB9 673 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 PFKFB2O60825 505 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 PARP1P09874 1014 aaKnown RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 BMP3P12645 472 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 SLC1A4P43007 532 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 GNAQP50148 359 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 HMGCS2P54868 508 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 ZYXQ15942 572 aaKnown RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 ASPRV1Q53RT3 343 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 KIAA1755Q5JYT7 1200 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 GPATCH4Q5T3I0 446 aaKnown RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 CTCFLQ8NI51 663 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 MS4A4AQ96JQ5 239 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 MYL10Q9BUA6 226 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 SLKQ9H2G2 1235 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms