RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 DGKHQ86XP1 1220 aa34.52■■■■□ 3.12
USP42-202ENST00000404008 C12orf42Q96LP6 360 aa34.52■■■■□ 3.12
USP42-202ENST00000404008 PTPN18Q99952 460 aa34.52■■■■□ 3.12
USP42-202ENST00000404008 PRC1O43663 620 aa34.51■■■■□ 3.12
USP42-202ENST00000404008 GADL1Q6ZQY3 521 aa34.51■■■■□ 3.12
USP42-202ENST00000404008 LRRC47Q8N1G4 583 aaKnown RBP34.51■■■■□ 3.12
USP42-202ENST00000404008 VCPKMTQ9H867 229 aa34.51■■■■□ 3.12
USP42-202ENST00000404008 TMOD4Q9NZQ9 345 aa34.51■■■■□ 3.12
USP42-202ENST00000404008 HMGB1P09429 215 aaKnown RBP34.5■■■■□ 3.11
USP42-202ENST00000404008 ANKS1AQ92625 1134 aa34.5■■■■□ 3.11
USP42-202ENST00000404008 TMEM47Q9BQJ4 181 aa34.5■■■■□ 3.11
USP42-202ENST00000404008 GOPCQ9HD26 462 aa34.5■■■■□ 3.11
USP42-202ENST00000404008 TOP1P11387 765 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 PSMA5P28066 241 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 SEC23AQ15436 765 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 KIAA1755Q5JYT7 1200 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 GPAT2Q6NUI2 795 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 IL17RAQ96F46 866 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 MTA3Q9BTC8 594 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 WDR19Q8NEZ3 1342 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 IGF2BP3O00425 579 aaKnown RBP eCLIP34.49■■■■□ 3.11
USP42-202ENST00000404008 IFIT3O14879 490 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 EXOSC10Q01780 885 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 SART3Q15020 963 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 DHX32Q7L7V1 743 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 IFNL1Q8IU54 200 aa34.49■■■■□ 3.11
USP42-202ENST00000404008 UPF2Q9HAU5 1272 aaKnown RBP34.49■■■■□ 3.11
USP42-202ENST00000404008 BTBD19C9JJ37 291 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 TREML2Q5T2D2 321 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 GMCL1P1Q8NEA9 526 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 IGDCC4Q8TDY8 1250 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 LPAR1Q92633 364 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 C22orf23Q9BZE7 217 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 TM6SF1Q9BZW5 370 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 AGTPBP1Q9UPW5 1226 aa34.48■■■■□ 3.11
USP42-202ENST00000404008 ERICH2A1L162 156 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 F5H6K3 240 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 VCAM1P19320 739 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 CASTP20810 708 aaKnown RBP34.47■■■■□ 3.11
USP42-202ENST00000404008 KLRC3Q07444 240 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 BLOC1S2Q6QNY1 142 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 ANKRD23Q86SG2 305 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 FAM43AQ8N2R8 423 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 TMEM87BQ96K49 555 aa34.47■■■■□ 3.11
USP42-202ENST00000404008 CPA1P15085 419 aa34.46■■■■□ 3.11
USP42-202ENST00000404008 TMEM67Q5HYA8 995 aa34.46■■■■□ 3.11
USP42-202ENST00000404008 IFIT1BQ5T764 474 aaKnown RBP34.46■■■■□ 3.11
USP42-202ENST00000404008 SPICE1Q8N0Z3 855 aa34.46■■■■□ 3.11
USP42-202ENST00000404008 ZSWIM6Q9HCJ5 1215 aa34.46■■■■□ 3.11
USP42-202ENST00000404008 NDUFB10O96000 172 aa34.45■■■■□ 3.11
USP42-202ENST00000404008 RPS6KB1P23443 525 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 RBM25P49756 843 aaKnown RBP34.44■■■■□ 3.1
USP42-202ENST00000404008 WTAPQ15007 396 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 TCEANC2Q96MN5 208 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 LRRC2Q9BYS8 371 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 LY9Q9HBG7 655 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 ZCCHC17Q9NP64 241 aaKnown RBP34.44■■■■□ 3.1
USP42-202ENST00000404008 SLC45A1Q9Y2W3 748 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 PARP14Q460N5 1801 aa34.44■■■■□ 3.1
USP42-202ENST00000404008 SH2B2O14492 632 aaPredicted RBP34.43■■■■□ 3.1
USP42-202ENST00000404008 RAD21O60216 631 aa34.43■■■■□ 3.1
USP42-202ENST00000404008 OTUD7BQ6GQQ9 843 aa34.43■■■■□ 3.1
USP42-202ENST00000404008 RUFY3Q7L099 469 aa34.43■■■■□ 3.1
USP42-202ENST00000404008 KAT14Q9H8E8 782 aa34.43■■■■□ 3.1
USP42-202ENST00000404008 SENP2Q9HC62 589 aa34.43■■■■□ 3.1
USP42-202ENST00000404008 GPHNQ9NQX3 736 aaPredicted RBP34.43■■■■□ 3.1
USP42-202ENST00000404008 PDHXO00330 501 aa34.42■■■■□ 3.1
USP42-202ENST00000404008 WDR46O15213 610 aaKnown RBP34.42■■■■□ 3.1
USP42-202ENST00000404008 SLFN13Q68D06 897 aa34.42■■■■□ 3.1
USP42-202ENST00000404008 PNMA1Q8ND90 353 aa34.42■■■■□ 3.1
USP42-202ENST00000404008 HOXA7P31268 230 aaPredicted RBP34.41■■■■□ 3.1
USP42-202ENST00000404008 JMYQ8N9B5 988 aa34.41■■■■□ 3.1
USP42-202ENST00000404008 RPAP3Q9H6T3 665 aaPredicted RBP34.41■■■■□ 3.1
USP42-202ENST00000404008 CYP46A1Q9Y6A2 500 aa34.41■■■■□ 3.1
USP42-202ENST00000404008 MAP2K1Q02750 393 aaPredicted RBP34.4■■■■□ 3.1
USP42-202ENST00000404008 PABPC4Q13310 644 aaKnown RBP eCLIP34.4■■■■□ 3.1
USP42-202ENST00000404008 GMCL1Q96IK5 515 aa34.4■■■■□ 3.1
USP42-202ENST00000404008 UPF3BQ9BZI7 483 aaKnown RBP34.4■■■■□ 3.1
USP42-202ENST00000404008 RLFQ13129 1914 aa34.4■■■■□ 3.1
USP42-202ENST00000404008 ALDH1A1P00352 501 aa34.39■■■■□ 3.1
USP42-202ENST00000404008 LIFRP42702 1097 aa34.39■■■■□ 3.1
USP42-202ENST00000404008 NUP88Q99567 741 aaPredicted RBP34.39■■■■□ 3.1
USP42-202ENST00000404008 USP17L15C9J2P7 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L13C9JLJ4 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L11C9JVI0 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L18D6R9N7 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L22D6RA61 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L17D6RBQ6 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L19D6RCP7 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L20D6RJB6 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 USP17L24Q0WX57 530 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 RASGRP2Q7LDG7 609 aa34.38■■■■□ 3.09
USP42-202ENST00000404008 FAM83BQ5T0W9 1011 aa34.37■■■■□ 3.09
USP42-202ENST00000404008 CATSPERGQ6ZRH7 1159 aa34.37■■■■□ 3.09
USP42-202ENST00000404008 TMTC2Q8N394 836 aa34.37■■■■□ 3.09
USP42-202ENST00000404008 TBC1D32Q96NH3 1257 aa34.37■■■■□ 3.09
USP42-202ENST00000404008 MTMR7Q9Y216 660 aa34.37■■■■□ 3.09
USP42-202ENST00000404008 FBXL16Q8N461 479 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 DCAF4Q8WV16 495 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 KIF2CQ99661 725 aa34.36■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms