RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CST3P01034 146 aaPredicted RBP5.6□□□□□ -1.51
HMGB1-204ENST00000399489 RLBP1P12271 317 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 HSD3B2P26439 372 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 KIR3DL1P43629 444 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 PDE4BQ07343 736 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 ZNF124Q15973 351 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MLANAQ16655 118 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 TMEM67Q5HYA8 995 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 RASIP1Q5U651 963 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 LETMD1Q6P1Q0 360 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MPZL3Q6UWV2 235 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 THAP5Q7Z6K1 395 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MORC4Q8TE76 937 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 KIRREL1Q96J84 757 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 PPP1R16BQ96T49 567 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 PARP2Q9UGN5 583 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 H3BS24 57 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 CBX7O95931 251 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 RAC2P15153 192 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 ZNF76P36508 570 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 ETV3P41162 512 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 SLBPQ14493 270 aaKnown RBP eCLIP5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MIR1-1HGQ9H1L0 117 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 FBRSQ9HAH7 460 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MRS2Q9HD23 443 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 COL4A3BPQ9Y5P4 624 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 MRPL42Q9Y6G3 142 aaKnown RBP5.6□□□□□ -1.51
HMGB1-204ENST00000399489 AK5Q9Y6K8 562 aa5.6□□□□□ -1.51
HMGB1-204ENST00000399489 GLI1P08151 1106 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 GRK4P32298 578 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 XPCQ01831 940 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-204ENST00000399489 BMS1Q14692 1282 aaKnown RBP5.59□□□□□ -1.51
HMGB1-204ENST00000399489 HSP90AB2PQ58FF8 381 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 RNF187Q5TA31 235 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-204ENST00000399489 SOGA3Q5TF21 947 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 PRAMEF13Q5VWM6 474 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 TMC4Q7Z404 712 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 GAL3ST3Q96A11 431 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 SEMA3GQ9NS98 782 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 CHPF2Q9P2E5 772 aa5.59□□□□□ -1.51
HMGB1-204ENST00000399489 SORBS3O60504 671 aa5.58□□□□□ -1.52
HMGB1-204ENST00000399489 GDNFP39905 211 aa5.58□□□□□ -1.52
HMGB1-204ENST00000399489 PTPN11Q06124 597 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-204ENST00000399489 XAGE3Q8WTP9 111 aa5.58□□□□□ -1.52
HMGB1-204ENST00000399489 ATP13A1Q9HD20 1204 aa5.58□□□□□ -1.52
HMGB1-204ENST00000399489 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-204ENST00000399489 CAPN6Q9Y6Q1 641 aa5.58□□□□□ -1.52
HMGB1-204ENST00000399489 PGRP06401 933 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 ITGAEP38570 1179 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 RAP1GAPP47736 663 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 ARID5AQ03989 594 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 SLC6A19Q695T7 634 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 RPUSD2Q8IZ73 545 aaKnown RBP5.57□□□□□ -1.52
HMGB1-204ENST00000399489 PIWIL2Q8TC59 973 aaKnown RBP5.57□□□□□ -1.52
HMGB1-204ENST00000399489 DUSP9Q99956 384 aaKnown RBP5.57□□□□□ -1.52
HMGB1-204ENST00000399489 IRF2BPLQ9H1B7 796 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 PCDH12Q9NPG4 1184 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 PRR33A8MZF0 331 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 LIG3P49916 1009 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 DAB2P98082 770 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 SEPT6Q14141 434 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 MAP3K11Q16584 847 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 NKG7Q16617 165 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 PLEKHG6Q3KR16 790 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-204ENST00000399489 AGMOQ6ZNB7 445 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 MCF2L2Q86YR7 1114 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 SMC5Q8IY18 1101 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 UBE2FQ969M7 185 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 TOX2Q96NM4 488 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 TRIT1Q9H3H1 467 aaKnown RBP5.57□□□□□ -1.52
HMGB1-204ENST00000399489 RNF19AQ9NV58 838 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 ZSWIM5Q9P217 1185 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 VTI1BQ9UEU0 232 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 RAPGEFL1Q9UHV5 662 aa5.57□□□□□ -1.52
HMGB1-204ENST00000399489 U2SURPO15042 1029 aaKnown RBP5.56□□□□□ -1.52
HMGB1-204ENST00000399489 DBX2Q6ZNG2 339 aa5.56□□□□□ -1.52
HMGB1-204ENST00000399489 TMPRSS7Q7RTY8 843 aa5.56□□□□□ -1.52
HMGB1-204ENST00000399489 CDH24Q86UP0 819 aa5.56□□□□□ -1.52
HMGB1-204ENST00000399489 ZSCAN18Q8TBC5 510 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-204ENST00000399489 SYTL4Q96C24 671 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-204ENST00000399489 ALPK1Q96QP1 1244 aa5.56□□□□□ -1.52
HMGB1-204ENST00000399489 ZNF503-AS2A6NEH8 195 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 BPNT1O95861 308 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 FGRP09769 529 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 RGS19P49795 217 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 MESP2Q0VG99 397 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 PSMD2Q13200 908 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 MRPL41Q8IXM3 137 aaKnown RBP5.55□□□□□ -1.52
HMGB1-204ENST00000399489 LIN37Q96GY3 246 aaPredicted RBP5.55□□□□□ -1.52
HMGB1-204ENST00000399489 TMEM87BQ96K49 555 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 IFT57Q9NWB7 429 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 SLAMF8Q9P0V8 285 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 ADAM30Q9UKF2 790 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 INPP5FQ9Y2H2 1132 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 PCDHB5Q9Y5E4 795 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 ST14Q9Y5Y6 855 aa5.55□□□□□ -1.52
HMGB1-204ENST00000399489 ENPP3O14638 875 aa5.54□□□□□ -1.52
HMGB1-204ENST00000399489 EIF3JO75822 258 aaKnown RBP5.54□□□□□ -1.52
HMGB1-204ENST00000399489 RPL6Q02878 288 aaKnown RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms