RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 GTPBP6O43824 516 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 CD44P16070 742 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 GTF2E1P29083 439 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 HNRNPH2P55795 449 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 MTF1Q14872 753 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 PTPN21Q16825 1174 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 PARP10Q53GL7 1025 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 BEND6Q5SZJ8 279 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 DZIP3Q86Y13 1208 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 EPSTI1Q96J88 318 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ZSCAN10Q96SZ4 725 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 NAPGQ99747 312 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ZKSCAN3Q9BRR0 538 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 BRIP1Q9BX63 1249 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 SEC31BQ9NQW1 1179 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 CWC15Q9P013 229 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 LRP2BPQ9P2M1 347 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 MYH2Q9UKX2 1941 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 A0A087X0B3 334 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 MAGEB6P1A0A0J9YX57 407 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 GYPCP04921 128 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 MCM3P25205 808 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 CASP14P31944 242 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 IGHMBP2P38935 993 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 AFMP43652 599 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 E2F4Q16254 413 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 KIF4BQ2VIQ3 1234 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 CCDC152Q4G0S7 254 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ZNF569Q5MCW4 686 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 TTC38Q5R3I4 469 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ARL6IP4Q66PJ3 421 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ZNF662Q6ZS27 426 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 IQCA1Q86XH1 822 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 CDC5LQ99459 802 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ACBD3Q9H3P7 528 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 ANKZF1Q9H8Y5 726 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 LZTFL1Q9NQ48 299 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 GNL3LQ9NVN8 582 aaKnown RBP11.31□□□□□ -0.6
COL17A1-203ENST00000393211 DUOX1Q9NRD9 1551 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 RREB1Q92766 1687 aa11.31□□□□□ -0.6
COL17A1-203ENST00000393211 XIRP1Q702N8 1843 aaKnown RBP11.3□□□□□ -0.6
COL17A1-203ENST00000393211 CTAGE15A4D2H0 777 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 H7C1D1 291 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 N4BP3O15049 544 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 MYL1P05976 194 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 CTAGE8P0CG41 777 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ATP2B1P20020 1258 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 CYP7A1P22680 504 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 PAK1Q13153 545 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 KRT31Q15323 416 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 IFIT1BQ5T764 474 aaKnown RBP11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ZNF658Q5TYW1 1059 aaPredicted RBP11.3□□□□□ -0.6
COL17A1-203ENST00000393211 CTAGE6Q86UF2 777 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 CTAGE4Q8IX94 777 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ENAHQ8N8S7 591 aaPredicted RBP11.3□□□□□ -0.6
COL17A1-203ENST00000393211 HELBQ8NG08 1087 aaPredicted RBP11.3□□□□□ -0.6
COL17A1-203ENST00000393211 GOLGA5Q8TBA6 731 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 EPC1Q9H2F5 836 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ABHD10Q9NUJ1 306 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 TAOK2Q9UL54 1235 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 L1RE1Q9UN81 338 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ZBTB1Q9Y2K1 713 aa11.3□□□□□ -0.6
COL17A1-203ENST00000393211 ZNF804BA4D1E1 1349 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 A0A1W2PQC6 194 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 LONP1P36776 959 aaKnown RBP11.29□□□□□ -0.6
COL17A1-203ENST00000393211 FXR1P51114 621 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL17A1-203ENST00000393211 COPB1P53618 953 aaKnown RBP11.29□□□□□ -0.6
COL17A1-203ENST00000393211 STX17P56962 302 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 TROAPQ12815 778 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 KLHL10Q6JEL2 608 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 WDR93Q6P2C0 686 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 PDXDC2PQ6P474 469 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 TMTC3Q6ZXV5 915 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 CCDC82Q8N4S0 544 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 CPLX3Q8WVH0 158 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 SHISA4Q96DD7 197 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 VPS54Q9P1Q0 977 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 ADAM21Q9UKJ8 722 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 CTNND2Q9UQB3 1225 aa11.29□□□□□ -0.6
COL17A1-203ENST00000393211 V9GY48 417 aaPredicted RBP11.29□□□□□ -0.6
COL17A1-203ENST00000393211 ORC4O43929 436 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 RPS6KA5O75582 802 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 CALML3P27482 149 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 BCAMP50895 628 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 PTGDRQ13258 359 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 TCP11X2Q5H9J9 407 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 RRAGBQ5VZM2 374 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 CMTR1Q8N1G2 835 aaKnown RBP11.28□□□□□ -0.6
COL17A1-203ENST00000393211 SLC35F6Q8N357 371 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 EHBP1Q8NDI1 1231 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 SLC4A9Q96Q91 983 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 IRX2Q9BZI1 471 aaPredicted RBP11.28□□□□□ -0.6
COL17A1-203ENST00000393211 HAUS4Q9H6D7 363 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 VIPAS39Q9H9C1 493 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 XDHP47989 1333 aa11.28□□□□□ -0.6
COL17A1-203ENST00000393211 MINDY4BA8MYZ0 360 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 KCNJ18B7U540 433 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 IVLP07476 585 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 EEF1GP26641 437 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms